| Id Trinity | TRINITY_DN49100_c2_g2_i2 |
|---|---|
| Name Transcript | Ll_transcript_293139 |
| Sequence | CTATTCACAAAAACACTATTCACAAAAACACTATTCACAAAAACACTATTCACAAAAACACTATTCACAAAAACACTATTCACGAAATCACTATTCACGT GAATAGTATTTCCACCAATATTTAGCCGAAAAGAAAACCAATCAGCTCTTATACAAGTTGTTAGGAAACTACGTAAAAATTTCCAGTCATATTCCTGGAA TAGAGATTTAAATACGGAATAATAACACACATAAAATTGATAACGGAGTTCGGCCAATTATGTCTACATTTTCGGGCTGCTGCAGACATTTTATAGGAAA GGAAAATATATTGTGTTTACAAACACTCACACTCTCACAAACCCACAACCCAATTACACCTAAGAATTTCTCTCACTGAGATTTTCTTATTCTGAGATTT TTTTTCTTATCTCTCACTATACTTTGCTTTGAGAAGCTGGAATGATTTTTTCATTCAGCTTACACAGTTATTTATACAAGTATAAAGCTGTGTGAATACA TGCAAAGTTTCAAGCACCAAAACTTTGATTTTGCATTGCCGGCCTATACCTTAGGCCATTACATTTTTCTTCATTCAACTATTTGCATTTAATGCCATGT TTCAAGGCTTTTCTCTTTGACTTTTCCCATGGGTGACATAGTGTAACAATCTCCCACTTGAAGACTGACTTCAGTTGGTCTTCACACCTCGATCATGCAG CAACCTTTTCTAGTATGTTATTTAAGCAGACTAACTGAAGTTGAGCACAACTTCAGTTTGTCAATAGTCACCACTTTTGTTAACATGTCTGTTGGGTTCT TACTTCCTAGGATCTTCCTCAATGTTAGTACCTCATCCTCAAGTAGAGATTTAATGAAGTGATAACGAAGATCAATGTGCTTTATTCTAGAGTGAAATGT TGAGTTCTTAGCCAAATGTATTGCACTCTGACTATCACTGTGCAAAAGATCCTTCTCTGGGATGAATCCCAACTTTGTTAATAGTCCTTGAAGCCATATC AATTCTTTGCTAACTTCTGTTACTGCTACATACTCAGCCTCTGTAGTGGACAAAACAACGGTCTTTTGTATCTGCGACATCCAACTAACAGCTGTAGTAC CAACAGTAAATATGTAACCAGTGGTACTTCTTCGATGATCAACTTCACTAGCAGAGTCCGCATCTACGTAGCCGTGTACTTTTAATTCACCTTTACTAAA GCACAAACGCTTCTCCTTAGTGCCTCGTAGATACCTCAAAATCCATTTAAAACTTCCCAATGAGCTTTACCTGGATTTGACATAAACCTTCTTAAACCTC CCACTGTATGGCCAATGTCTAGCCTTGTGCATACCATCGCGCACATCAAACTTCCAATGGCTGAAGCATATGAAATCTTAGCCATCAATTCTTTCTCTTC GTCCGTCTTTGGGGCCTGGTCTTTTGATAGACGAAAATGACTAGCCAAAGGTGTGCTAACTGGTTTGGCATTGTCCATATTGAATCTTTGTAAAACACGG TTGATTTACTCCGCCTGAGATAACTGCAAAGTTCCCTTTTGCTTATCTCTCGTGATTTGCATTCCAAGGATCTTCTTCGCTGGACCCAAATCTTTCATGT CAAATTCTTTTGACAACTGCTTCTTCAAGTTTCTGATCTTGACCATATCGGAACCTGCTACTAACATATCATCAACATAAAGTATCAAAATGATATAACT AGAGTTATACCTATTGAAGAAACAACAATGGTCTGCATTACACTTCTGGAAACCTTCCTTGTGCATGAAGCTCTCAAACTTCATATACCACTGTCTTGGA GCTTGTTTCAGACCATACAAGTTCTTCTTTAATCTGCACACCATATTTTCTTTCCCTTTCTCTGGGAAACCTTCAGGTTGATGCATGTAGATCTCGTCAT CCAAATCTCCGTGAAGAAACGCAGTCTTCACATCCAATTTCTCTAGGTAGAGCTCTTCACTAGGAACAATACTTAACACATACCTGATAGCATTGAGCTT CACAACTGGAGCAAAAATCTCAGTGTAGTCAACACCTTCTTTTTGCTGGAAACCTTTTACAACTAGTCGCGCTTTATATCTTTTAGAGCCATTATGCTCC TCCTTCTCCTGATACACCCATTTGTTGTGAAGTGCCTTTTTCCCTATGAGTAACTCTGCTAGTTCCCATGTCTGATTGGAGATCAAAGACTTCATCTCGT CTTTCATGGCAAGTGCCCACTTGCTTGCATCTGTGATGTGACATGCTTCTGCATAGTCTTCAGGTTCTCCTCCATCTGTCAACAACATGTAGCTCATGTA TTTCCTGTTAGGCACAAGGATTCTAGAAGACCTTCTCAATACAGGAGTTGGAGTAGGGAGCTCTGTTATATCAGATTGTTGCTCGATGCCTACTTCTGTT GATTCCTCTGACTGAGGGCTCTCAACTATAAGACTTTCTAGGACATCATCCATATCTGCATAAACGGGCCCACTCAGATCTGAGTTACTGGCACTTGTAT TATGCTTGTCCTTGTACATCACTCTTTCATTGAAGATCACATCTCTATTGTGGATCATCTTTTTATTTTCATCATCCCAAAGGCGGTAACCAAACTCATC TTCACCATAACCGATGAAAGTGCACTTCTTTGATTTTGGGTCAAGTTTGTTCCTACCTTGATCACTAATGTGCACATATGCTGCACAACCAAAAACTCTA AGATGTGAGAGTTTTACCTCTTTTCCACTCCACACCTCTTGTGGTATTCTAAGCTCCAATGGTACCGGTGGTCCTCGGTTGATTAAGTAAGATGTTGTGT TAACTGCTTCTGCCCAGAATTGCTTTGGTAGGCCTGACTGCACACGCATGCTTCTGCCTCTTTCAGTCAATGCTCGGTTCGTACGCTCATCTACACCATT GTGTTGAGGCGTACCTGACACAGTCCTCTCCATTCTGATCCCGTGCTCATAGCAAAACTTCTTGAATCTAGTGTCTTCATATTCACCACCATTGTCAATC CTGAGCTTTTTGACCTTCAACCCTGTCTCATTTTCCATCATGGCTTTCCACATCTTGAAAGCTTCAAATACTTCAGATTTATGTTTCAGAAAGTATACCC ATACCTTTCTAGAGTGATCGTCAATAAAAGTCACAAAGTATTATTTCCTACTAATGGATGAGACAGTCGTTGGACCCCAAATATCAGAGTGCACAAACTC GAGTCTCTCCTTCTTCGGGGTTCTTCCACTTTTTTGAAAGCTAACTCTTTTCTGCTTTCCGAATATACAGTCTTCACACATGTCAATCTCAACTAACTGA AGACCTGGAAGTTTGCCCTTCGAGTGCATGAAATTCATCCCTTTCTCACTCATATGGCCAAGTCTTTGGTGCCATAGATTGGGATTTTCATTTATTGCGA CTATAATCAAATGACATGCTCCCACTGTTTTGTAAAGAGTACTACTCTTTTTGCCGCGAGCTATTGTCATTGCACCTTTTGAAATTTTCCATTGATCTCC ATTGAAGATTGTTGTGTAGCCATCACTGGACAGCTGGCCTACTGAGATTAAGTTCTTCGTCAGGTCAGGAATGTGTATGACATTCTTCAGTTCCCAAACA GACCCGTTCAACTTGATCTTTACTACACCTTTTCCTACAATCTCATAAGACTGTTCATTACCAAGATAAACTTTACCGAGATTTCCAAAGTCATAATTCT CAAAGAGTTCTTTCTGCGAAGTTGCATGAAATGATGCTCCAGAGTCTAACACCCAAGACTCTTCCTTGTTCTCCAAAGAACATATCAACACATCATTCCC TCCTGAGGTTGAAGCAACGTTAGCCTCATCTTTCACATCCTGTTTCTTCGATGCACTCATAGATTGATTTTTGTAGTGTTCGGTCTTCCCACAGTTCCAA CACTCGATAGTCTTCGAGCTGTTAGAACTATGATGATTTCTAGACTTGGACGGTCTCACCTTTGATTTACCGCGTTCTCTTCCTCTGGTTGAACTCCTAC CTCTTGACTCTGTATGAAATACTGAAAAGGTTGATGATTCACCCGACTCTTTCCGGAGAATCTCTTCATTCAGGACCAAGTCACGAACATCATCAAATTT TAACTTGTTGCTTCCTGATGAGCTACTCACAGCTGTGACAGTAGCATTCCAACTTTCTGGTATGGAAGACAAAAGTATCAAGGCTCGTACTTCTTCGTCG AAATTGATTCCAACTGAACTCAACTGGGTTGTAACTGTGTTGAGTTCATTTAGATGTTGCGTCGTTGATGCGCCTTCTGTCATCCTTAGGTTGAACAACC GCCTCATCAAATGAACTTTGTTTGAGGCCGATGGCTTTTCGTACGTATTGGAAAGAGCCATCATAACACTAGCCGTAGTCTTTTCTTTTGCAATGTTGAA AGCAACATTATGGGATAACGTCAACCAGATGAATCCAACCGGATGCCCAAATATTGGAAAGATTTGGCCTTTGAACTAAATCTCTGGACGGATCGGGAAG ATATTAGCATATTGTCCGCCATTAAATGGTACTCTCAATAATCGCATGAAACTAAATATATCATAAAGCTTATTAAATCAAATGATTATTTATTCAAACA AAATATTTTATTTTTTTATTTTTGTGTCTAATAAGAGTTTATTTTGCTCCTACATATCCCTAGGTACAACAGGAAAATCAAGGCTACGTAGTTCTTGGTA TAAAATGTTTGTGTGTTTGATAGATTTTAATTAAGAAAAGTGGTTTGAGAAATTTGTAAGATGATTTTAATTAAAGAGGGA BLAST |
| Tissue | pods |
| Gene name | LI_gene_166568; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_293139
| Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 50.09% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 44.28% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_020987654.1) |
| Pfam | Integrase core domain (PF00665.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |