Ll_transcript_293145

• Id Trinity: TRINITY_DN49100_c2_g2_i4
• Name Transcript: Ll_transcript_293145
• Sequence: CGGGCTGCCGCAGACCTTTTATAAGAAAGGGAAATATATTGTGTTTACAAACACTCACACTCTCACAAACCCACAACCCAATTACACCTAAGAATTTCTC TCACTGAGATTTTCTTATTCTGAGATTTTTTTTCTTATCTCTCACTATACTTTGCTTTGAGAAGCTGGAATGATTTTTTCATTCAGCTTACACAGTTATT TATACAAGTATAAAGCTGTGTGAATACATGCAAAGTTTCAAGCACCAAAACTTTGATTTTGCATTGCCGGCCTATACCTTAGGCCATTACATTTTTCTTC ATTCAACTATTTGCATTTAATGCCATGTTTCAAGGCTTTTCTCTTTGACTTTTCCCATGGGTGACATAGTGTAACAATCTCCCACTTGAAGACTGACTTC AGTTGGTCTTCACACCTCGATCATGCAGCAACCTTTTCTAGTATGTTATTTAAGCAGACTAACTGAAGTTGAGCACAACTTCAGTTTGTCAATAGTCACC ACTTTTGTTAACATGTCTGTTGGGTTCTTACTTCCTAGGATCTTCCTCAATGTTAGTACCTCATCCTCAAGTAGAGATTTAATGAAGTGATAACGAAGAT CAATGTGCTTTATTCTAGAGTGAAATGTTGAGTTCTTAGCCAAATGTATTGCACTCTGACTATCACTGTGCAAAAGATCCTTCTCTGGGATGAATCCCAA CTTTGTTAATAGTCCTTGAAGCCATATCAATTCTTTGCTAACTTCTGTTACTGCTACATACTCAGCCTCTGTAGTGGACAAAACAACGGTCTTTTGTATC TGCGACATCCAACTAACAGCTGTAGTACCAACAGTAAATATGTAACCAGTGGTACTTCTTCGATGATCAACTTCACTAGCAGAGTCCGCATCTACGTAGC CGTGTACTTTTAATTCACCTTTACTAAAGCACAAACGCTTCTCCTTAGTGCCTCGTAGATACCTCAAAATCCATTTAAAACTTCCCAATGAGCTTTACCT GGATTTGACATAAACCTTCTTAAACCTCCCACTGTATGGCCAATGTCTAGCCTTGTGCATACCATCGCGCACATCAAACTTCCAATGGCTGAAGCATATG AAATCTTAGCCATCAATTCTTTCTCTTCGTCCGTCTTTGGGGCCTGGTCTTTTGATAGACGAAAATGACTAGCCAAAGGTGTGCTAACTGGTTTGGCATT GTCCATATTGAATCTTTGTAAAACACGGTTGATTTACTCCGCCTGAGATAACTGCAAAGTTCCCTTTTGCTTATCTCTCGTGATTTGCATTCCAAGGATC TTCTTCGCTGGACCCAAATCTTTCATGTCAAATTCTTTTGACAACTGCTTCTTCAAGTTTCTGATCTTGACCATATCGGAACCTGCTACTAACATATCAT CAACATAAAGTATCAAAATGATATAACTAGAGTTATACCTATTGAAGAAACAACAATGGTCTGCATTACACTTCTGGAAACCTTCCTTGTGCATGAAGCT CTCAAACTTCATATACCACTGTCTTGGAGCTTGTTTCAGACCATACAAGTTCTTCTTTAATCTGCACACCATATTTTCTTTCCCTTTCTCTGGGAAACCT TCAGGTTGATGCATGTAGATCTCGTCATCCAAATCTCCGTGAAGAAACGCAGTCTTCACATCCAATTTCTCTAGGTAGAGCTCTTCACTAGGAACAATAC TTAACACATACCTGATAGCATTGAGCTTCACAACTGGAGCAAAAATCTCAGTGTAGTCAACACCTTCTTTTTGCTGGAAACCTTTTACAACTAGTCGCGC TTTATATCTTTTAGAGCCATTATGCTCCTCCTTCTCCTGATACACCCATTTGTTGTGAAGTGCCTTTTTCCCTATGAGTAACTCTGCTAGTTCCCATGTC TGATTGGAGATCAAAGACTTCATCTCGTCTTTCATGGCAAGTGCCCACTTGCTTGCATCTGTGATGTGACATGCTTCTGCATAGTCTTCAGGTTCTCCTC CATCTGTCAACAACATGTAGCTCATGTATTTCCTGTTAGGCACAAGGATTCTAGAAGACCTTCTCAATACAGGAGTTGGAGTAGGGAGCTCTGTTATATC AGATTGTTGCTCGATGCCTACTTCTGTTGATTCCTCTGACTGAGGGCTCTCAACTATAAGACTTTCTAGGACATCATCCATATCTGCATAAACGGGCCCA CTCAGATCTGAGTTACTGGCACTTGTATTATGCTTGTCCTTGTACATCACTCTTTCATTGAAGATCACATCTCTATTGTGGATCATCTTTTTATTTTCAT CATCCCAAAGGCGGTAACCAAACTCATCTTCACCATAACCGATGAAAGTGCACTTCTTTGATTTTGGGTCAAGTTTGTTCCTACCTTGATCACTAATGTG CACATATGCTGCACAACCAAAAACTCTAAGATGTGAGAGTTTTACCTCTTTTCCACTCCACACCTCTTGTGGTATTCTAAGCTCCAATGGTACCGGTGGT CCTCGGTTGATTAAGTAAGATGTTGTGTTAACTGCTTCTGCCCAGAATTGCTTTGGTAGGCCTGACTGCACACGCATGCTTCTGCCTCTTTCAGTCAATG CTCGGTTCGTACGCTCATCTACACCATTGTGTTGAGGCGTACCTGACACAGTCCTCTCCATTCTGATCCCGTGCTCATAGCAAAACTTCTTGAATCTAGT GTCTTCATATTCACCACCATTGTCAATCCTGAGCTTTTTGACCTTCAACCCTGTCTCATTTTCCATCATGGCTTTCCACATCTTGAAAGCTTCAAATACT TCAGATTTATGTTTCAGAAAGTATACCCATACCTTTCTAGAGTGATCGTCAATAAAAGTCACAAAGTATTATTTCCTACTAATGGATGAGACAGTCGTTG GACCCCAAATATCAGAGTGCACAAACTCGAGTCTCTCCTTCTTCGGGGTTCTTCCACTTTTTTGAAAGCTAACTCTTTTCTGCTTTCCGAATATACAGTC TTCACACATGTCAATCTCAACTAACTGAAGACCTGGAAGTTTGCCCTTCGAGTGCATGAAATTCATCCCTTTCTCACTCATATGGCCAAGTCTTTGGTGC CATAGATTGGGATTTTCATTTATTGCGACTATAATCAAATGACATGCTCCCACTGTTTTGTAAAGAGTACTACTCTTTTTGCCGCGAGCTATTGTCATTG CACCTTTTGAAATTTTCCATTGATCTCCATTGAAGATTGTTGTTTTAGCCATCACTGGACAGCTGGCCTACTGAGATTAAGTTCTTCGTCAGGTCAGGAA TGTGTATGACATTCTTCAGTTCCCAAACAGACCCGTTCAACTTGATCTTTACTACACCTTTTCCTACAATCTCATAAGACTGTTCATTACCAAGATAAAC TTTACCGAGATTTCCAAAGTCATAATTCTCAAAGAGTTCTTTCTGCGAAGTTGCATGAAATGATGCTCCAGAGTCTAACACCCAAGACTCTTCCTTGTTC TCCAAAGAACATATCAACACATCATTCCCTCCTGAGGTTGAAGCAACGTTAGCCTCATCTTTCACATCCTGTTTCTTCGATGCACTCATAGATTGATTTT TGTAGTGTTCGGTCTTCCCACAGTTCCAACACTCGATAGTCTTCGAGCTGTTAGAACTATGATGATTTCTAGACTTGGACGGTCTCACCTTTGATTTACC GCGTTCTCTTCCTCTGGTTGAACTCCTACCTCTTGACTCTGTATGAAATACTGAAAAGGTTGATGATTCACCCGACTCTTTCCGGAGAATCTCTTCATTC AGGACCAAGTCACGAACATCATCAAATTTTAACTTGTTGCTTCCTGATGAGCTACTCACAGCTGTGACAGTAGCATTCCAACTTTCTGGTATGGAAGACA AAAGTATCAAGGCTCGTACTTCTTCGTCGAAATTGATTCCAACTGAACTCAACTGGGTTGTAACTGTGTTGAGTTCATTTAGATGTTGCGTCGTTGATGC GCCTTCTGTCATCCTTAGGTTGAACAACCGCCTCATCAAATGAACTTTGTTTGAGGCCGATGGCTTTTCGTACGTATTGGAAAGAGCCATCATAACACTA GCCGTAGTCTTTTCTTTTGCAATGTTGAAAGCAACATTATGGGATAACGTCAACCAGATGAATCCAACCGGATGCCCAAATATTGGAAAGATTTGGCCTT TGAACTAAATCTCTGGACGGATCGGGAAGATATTAGCATATTGTCCGCCATTAAATGGTACTCTCAATAATCGCATGAAACTAAATATATCATAAAGCTT ATTAAATCAAATGATTATTTATTCAAACAAAATATTTTATTTTTTTATTTTTGTGTCTAATAAGAGTTTATTTTGCTCCTACATATCCCTAGGTACAACA GGAAAATCAAGGCTACGTAGTTCTTGGTATAAAATGTTTGTGTGTTTGATAGATTTTAATTAAGAAAAGTGGTTTGAGAAATTTGTAAGATGATTTTAAT TAAAGAGGGA
• Tissue: pods
• Gene name: LI_gene_166568;
• Additional information: -

Expression of Ll_transcript_293145

FPKM

• PAB: 0
• PNAB: 0.5
• PS1: 1.8
• PS2: 0
• PS3: 0.1
• PW1: 0.4
• PW2: 0.6
• PW3: 0.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_293145

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 50.09% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 50% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020987654.1)
• Pfam: Integrase core domain (PF00665.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;