| Id Trinity | TRINITY_DN49103_c2_g2_i11 |
|---|---|
| Name Transcript | Ll_transcript_292665 |
| Sequence | TTCGGGTGTGGAAATAGAACAGGATGTGAGGGTCAGTCATCAGGAAGAAACCGTGTTTTTGTTGTATGAGAAACAGGTTTCGAACAATTTTTCTGGCAAG CAACAAGGAGCTGTTGGTAATGGTGAAAGTGGTGCTCAAATTAATTCCTCTGATGGAGGCACACTAACTGAACTTGAGAAGTTACTAGGACAAAAAACTT TTACCAGATCTGAGATTGATCACTTGACAGCACTTATGCGTTCAAGAACTGTGGATGCGCCTATGCGGGAAGAAGAGAAGCGCACAGAAGTGGTTCCTTC TGAAGCAATACTGTCTTCTGAGCGAAAGGATGAAGGTCCCAAAACACCTATAGTACAAAATAGGGTTGAAAACCATCTTGCTCTAACCCCTTATGTTACT TCGAGAGTTCCTAGTGAGGATATCGCTTCACCTGCAGAGCTTGCAAAAGCTTACATGGGGAGCAGGCCTTCCAAGGTATTCTCATCAATGTTAAGTGGTC AAAGTCCTGCAGCAAGGGAGGGTCCAGCTTTTCTAAACAGTGATGATAACCTTCCTCTCAAATCCCCTATTATGTCAATTGTGCCAAGGACTGTTAGGCA TGCTGGGGTTCATGAAAATGGTTTTGCAAACCCAAGAAATCGTGGCAGATCTGCAATATATAGTATGGCCCGAACACCTTATGCCAGAATTTATCCAACC TCTACCCTCAAGGGGGTTGGACATGCTGAAGGTGAGCCATCATCTTCAACTCACTCTACATTGGATCATGACATGCTTTATGGATCTAAACAAGGGTCAG TAAAGCGTAGAAGTTCAGCATTGGATAATGATGTAGGATCTGTTGGTCCTATACGTCGAATCCGTCACAAGGCTAATCTATATTCTAAAGGCTCGGGCTT ACCTCCTTCTGGTAGTTCTCTATCTATTGCTAGGAGTGGACTCGGTGTTGGTGCTCCTCAACAACCCTCATCTTCCATGCGGAAGCCTATCATGTGGGAT GAAGTTAAGCATAGCCATATGGATTTACCAGAAGAAAATGTGCAAGACACTAGACCTAGTAAGAGTGGCCCTTTACCCTCAAAATCCAGCGAGATGGCTT CGAAGATATTGCAGCAACTTGATAAGATGGTTTCCCCTAAAGAGAAGTCATCTGAATCAAGGCTACCAAATGTGAATGATAAATCATCAACGAAGTTGTC CCCTTCCATGTTACATGGACAGACTCTTCGAAGCATGGAAGCAGTAGATTCATCAAAATCGCTGGATACTGTAAAAGATAATAGATTCAATATTGCACCT GGAAAGTTGTCTGATAGTGCTCAAAAGTTAGCTTCACAGATAGACAAGGTTGAAAATGGTCATTTGAAGCTTCTTGCTCCTTCTGATGGACTTGTTCCAT CTGTAACTAATGCAGATTCCAGAAATCCAAGGAATCAAACCAATTCTGCTGCGAAGTCCGTGGATTCTTTTGTGGTAAAATCTGCTTCATATCCTCCACA AAAGAAGAGAGCATTTCATATGAGTGCACAGGAGGATTGTCTGGACATGGATGATGATGCTTATTCTAATGGGGATATGTCCTCTGTTCTTCCCGTTGAT AACAAGATGACAAGTCCCAATGCAATGACAGTGAAGGATACCTTTGGTACTGAATCCGTTGCACAGGAGAATACCCGATCATTATCTGCAGTAATGGCAT CCAAAAGTTCTACAATAAGTGAGGAAGCTCATGATAGGACTGATGATAATGCTGATGGGTCTAGGGTCGGTGCGAAAGTTGATGTATCAACCTCTTTGAC ATCATCTATCTCCGATCCAACTTTTAAGCCAGCTACAGCAACTACAAGAACAAGTTTTGGTTCCCACAAATCTGCTTCACCAAATGGATCAAGTGCTATT CCTCCAGTCTTTAATTTTGAGCCATCAAAAGACATAACCAACTCTGGTACAATATTTGGTTTGGAAAAGGTTGTTTCATCAAAGGGGCTTGATGCTGATG TTCCATTAGTGAACTTTGGCAGCATTGGAAATGCTGGCAAGGTCCCCCAAATGCTATTTACTTCATCACCAGTTGTTGGTGAATCTACTTTGCCGAATTC AGGTGCTTCTTCTGACTCAAAGCTGGGGAGCTCGATCAGTTCTGCCACTGTTTCTGCTGCAACTGATTCTATGCCAAAAGTTCGTGAATCTGGTAATGTT GATGCTAAGACGAATATAGATTCTGTTAAGCCATCAGAAATTCCTGTTTCATCTGCAGTAACAACATCATTGTTCACACCACCAACAAGTGCATTTACTT TTGGCCAAAGTAATGGATCTCTTGCTGCAAGCTCTTCACTTTCCTCACCCTTTACCAGTCAGAATGTATTCAGCAGCTCACCTCTTGCAGCAAGCAGCAG CAGCATTAGTGCCAATAGCACTTCTTCCATAATTTCATCGAGCAGTAGCAGTTTCTCCAATCCGTTGGTGGCATCTTCATCTTCAATGACTTCCTCTTTC AAATTTGGTTCCTCTATTGTCCCATCAACAGGTTTACCTGTATCATCTTCTGTCTCAGAACCAGTGGAAACTAAGAATAGGGAAGTTGTAGGAAATGGTA ATCTAAGCAGCACTGTTTTTGGTAGCTCATCTTCTGCTGTTGGAAACACAGGGAGTGGCCTTTTTGGTTTCAGTTCCTCAGCGACGACTAGCCAGTCCCA GGGTTCTGTCATTGGTTCTAGCAGCGGATCAATGTTTACTGCTCAGGCATCTCCTGCTACCAGTGGGTTTGCAACTTCTACCCAGACCCAGTCGGTTCCA CTTGGCTCATCGTCATCATCTTCATTTTTTGGGTTGACTGGGAATACATCCTTTTCATCTGGTAATTCATTGTTTCCTTCAACTCCTGCCACAAATGCAG GTTTTTCTTTTGGGAGTTCATCATTTCCTTCTTCAAGTTCTGCTACAAACATTTTCAACTCTGGTACAACTTTTGGATTTGGTACCCCTGCTTCTTCTTC GGCAGTCAACTCTGTAAGCTCCAACAATGTTTCAAGTTCTTCTTTGTTTGGGTCTTCTAGTTGGCAGCCCAGAGAATCGTCTCCTTTTGGGTCCGCATTT AATCAAACATCTACTGCTTCTGTTGCTTCTACTAGCTCCCCCACAATGTTTTCGTCAACTCCTCAATTTTCATTCACTTCAGCAGCAACCACTACCTCCA CACAGCCTACTTTTGGAAATCCTAATTCTCCCTTCACATTTGGTTCAGCTCCTGTTAATAATGATCAGATGACTACAGAGGATAGTATGGCTGAAGACAC TGTTCAAGCAACTCCACCAGCGACTCCTGTATTTGGTCAGCAAGCAACTCCACCAGCGACTCCTATATTTGGTCAGCAAGCAACTCCACCAGCAACTGCT GTATTTGGTCAGCAAGCAACTCCACCAGCGACTCCTATATTTGGTCAGCAAGCAACTCCACCAGCAACTGCTGTATTTGGTCAGCAAGCAACTCCATCGG CAACTCCTGTATTTGGTCAGCAATCTACCCCAGTTCAATCAAATTTTGTATTTGGAGCATCAACTACATCAGGAGCCAATCCTTTCCAGTTTGCCAGTCA ACAGAATACTACTCCACCAAACGCTTCTCCGTTCCAGGCTTCTGGCAGCGTAGAATTTAGTGCTGGAGGAGGGAGTTTCTCATTAGGCACAGGTGGCGGT GACAAGTCTGGTAGAAGAATTGTGAAAGTTAAAGGTAGACAGCGCAAGAGGTAGGACTATTGTTTATGGAAATGGTTACTTTCTATCATTGCGGCGACAA AGAAATAAGCTCTGCCGGATATTGCTTTTTACTTAGCAATCTGGACAAGTGATGCTACTGAAAGCTAATCAAAATATACAAGCTTTTGTCTGCTTCCTTT CTCCTTCCATATTTTCTTACAGAGTGGAAGGCTGATGTTTTCCAAATTTTGTAGTTGTATGGTATGATGGAAAGTAATGTACTGTAATTGTAATGGTTTT AGGTCACAGGGTTTATGATTTGGTTAATTATAATTGCAGAAATCTGTGTTGTTGTTACTTGTACCATAACCAAAATTAAGTATGAATTTATGGATTAGCT TGTTGTAACTTAACAGTTGCAGTGAGCAATCAGTGAATGATTATTGCTGTTTGGCTTTCTGTTTCATGTTTTGTTTGGAGACTGATAAAATGTTTTAGTC ATAATTTCATTTAGAGCCGGâBLAST |
| Tissue | pods |
| Gene name | LI_gene_166593; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_292665
| Blastp | Nuclear pore complex protein NUP1 from Arabidopsis with 38.61% of identity |
|---|---|
| Blastx | Nuclear pore complex protein NUP1 from Arabidopsis with 40.26% of identity |
| Eggnog | nuclear pore complex protein(ENOG410XPV4) |
| Kegg | Link to kegg annotations (AT3G10650) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019461146.1) |
| Pfam | Nucleoporin FG repeat region (PF13634.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |