Ll_transcript_292657

• Id Trinity: TRINITY_DN49103_c2_g2_i5
• Name Transcript: Ll_transcript_292657
• Sequence: ATTTATCATCCGCTCATTTTCTCTCTCTTCCGCTGCGTTTCTCTCCGATTTTAAAACCCTAATTTTCAGTCTCTGCACTTTCTCCTTGAACCTCCTCACG AATCAACACACCTTTCTCCCTCTGTCACTGATGGCAACAGAAGAAAAAGAGAACCCATATGAAGGGTTAGGAACCGGTGGCAAATTCCGAAAACGCCCAT TCCGCAGAACCCAAACGACGCCGTACGATCGACCCTCAAATTCTCTCAGAAACCCTACAATAAACAACAACAACAACAAAAAAGGTTGGTTTTCAAAGGT TGTCGATCCTGCTCATAGACTCATCAGTTATAGTGCTCATTCTCTTTTCTCCTCTCTCTTTCGCAAGCGCCTTCCACCCCCTCAATCCAACGCTTCTTCT TCGGGTGTGGAAATAGAACAGGATGTGAGGGTCAGTCATCAGGAAGAAACCGTGTTTGTTTCGAACAATTTTTCTGGCAAGCAACAAGGAGCTGTTGGTA ATGGTGAAAGTGGTGCTCAAATTAATTCCTCTGATGGAGGCACACTAACTGAACTTGAGAAGTTACTAGGACAAAAAACTTTTACCAGATCTGAGATTGA TCACTTGACAGCACTTATGCGTTCAAGAACTGTGGATGCGCCTATGCGGGAAGAAGAGAAGCGCACAGAAGTGGTTCCTTCTGAAGCAATACTGTCTTCT GAGCGAAAGGATGAAGGTCCCAAAACACCTATAGTACAAAATAGGGTTGAAAACCATCTTGCTCTAACCCCTTATGTTACTTCGAGAGTTCCTAGTGAGG ATATCGCTTCACCTGCAGAGCTTGCAAAAGCTTACATGGGGAGCAGGCCTTCCAAGGTATTCTCATCAATGTTAAGTGGTCAAAGTCCTGCAGCAAGGGA GGGTCCAGCTTTTCTAAACAGTGATGATAACCTTCCTCTCAAATCCCCTATTATGTCAATTGTGCCAAGGACTGTTAGGCATGCTGGGGTTCATGAAAAT GGTTTTGCAAACCCAAGAAATCGTGGCAGATCTGCAATATATAGTATGGCCCGAACACCTTATGCCAGAATTTATCCAACCTCTACCCTCAAGGGGGTTG GACATGCTGAAGGTGAGCCATCATCTTCAACTCACTCTACATTGGATCATGACATGCTTTATGGATCTAAACAAGGGTCAGTAAAGCGTAGAAGTTCAGC ATTGGATAATGATGTAGGATCTGTTGGTCCTATACGTCGAATCCGTCACAAGGCTAATCTATATTCTAAAGGCTCGGGCTTACCTCCTTCTGGTAGTTCT CTATCTATTGCTAGGAGTGGACTCGGTGTTGGTGCTCCTCAACAACCCTCATCTTCCATGCGGAAGCCTATCATGTGGGATGAAGTTAAGCATAGCCATA TGGATTTACCAGAAGAAAATGTGCAAGACACTAGACCTAGTAAGAGTGGCCCTTTACCCTCAAAATCCAGCGAGATGGCTTCGAAGATATTGCAGCAACT TGATAAGATGGTTTCCCCTAAAGAGAAGTCATCTGAATCAAGGCTACCAAATGTGAATGATAAATCATCAACGAAGTTGTCCCCTTCCATGTTACATGGA CAGACTCTTCGAAGCATGGAAGCAGTAGATTCATCAAAATCGCTGGATACTGTAAAAGATAATAGATTCAATATTGCACCTGGAAAGTTGTCTGATAGTG CTCAAAAGTTAGCTTCACAGATAGACAAGGTTGAAAATGGTCATTTGAAGCTTCTTGCTCCTTCTGATGGACTTGTTCCATCTGTAACTAATGCAGATTC CAGAAATCCAAGGAATCAAACCAATTCTGCTGCGAAGTCCGTGGATTCTTTTGTGGTAAAATCTGCTTCATATCCTCCACAAAAGAAGAGAGCATTTCAT ATGAGTGCACAGGAGGATTGTCTGGACATGGATGATGATGCTTATTCTAATGGGGATATGTCCTCTGTTCTTCCCGTTGATAACAAGATGACAAGTCCCA ATGCAATGACAGTGAAGGATACCTTTGGTACTGAATCCGTTGCACAGGAGAATACCCGATCATTATCTGCAGTAATGGCATCCAAAAGTTCTACAATAAG TGAGGAAGCTCATGATAGGACTGATGATAATGCTGATGGGTCTAGGGTCGGTGCGAAAGTTGATGTATCAACCTCTTTGACATCATCTATCTCCGATCCA ACTTTTAAGCCAGCTACAGCAACTACAAGAACAAGTTTTGGTTCCCACAAATCTGCTTCACCAAATGGATCAAGTGCTATTCCTCCAGTCTTTAATTTTG AGCCATCAAAAGACATAACCAACTCTGGTACAATATTTGGTTTGGAAAAGGTTGTTTCATCAAAGGGGCTTGATGCTGATGTTCCATTAGTGAACTTTGG CAGCATTGGAAATGCTGGCAAGGTCCCCCAAATGCTATTTACTTCATCACCAGTTGTTGGTGAATCTACTTTGCCGAATTCAGGTGCTTCTTCTGACTCA AAGCTGGGGAGCTCGATCAGTTCTGCCACTGTTTCTGCTGCAACTGATTCTATGCCAAAAGTTCGTGAATCTGGTAATGTTGATGCTAAGACGAATATAG ATTCTGTTAAGCCATCAGAAATTCCTGTTTCATCTGCAGTAACAACATCATTGTTCACACCACCAACAAGTGCATTTACTTTTGGCCAAAGTAATGGATC TCTTGCTGCAAGCTCTTCACTTTCCTCACCCTTTACCAGTCAGAATGTATTCAGCAGCTCACCTCTTGCAGCAAGCAGCAGCAGCATTAGTGCCAATAGC ACTTCTTCCATAATTTCATCGAGCAGTAGCAGTTTCTCCAATCCGTTGGTGGCATCTTCATCTTCAATGACTTCCTCTTTCAAATTTGGTTCCTCTATTG TCCCATCAACAGGTTTACCTGTATCATCTTCTGTCTCAGAACCAGTGGAAACTAAGAATAGGGAAGTTGTAGGAAATGGTAATCTAAGCAGCACTGTTTT TGGTAGCTCATCTTCTGCTGTTGGAAACACAGGGAGTGGCCTTTTTGGTTTCAGTTCCTCAGCGACGACTAGCCAGTCCCAGGGTTCTGTCATTGGTTCT AGCAGCGGATCAATGTTTACTGCTCAGGCATCTCCTGCTACCAGTGGGTTTGCAACTTCTACCCAGACCCAGTCGGTTCCACTTGGCTCATCGTCATCAT CTTCATTTTTTGGGTTGACTGGGAATACATCCTTTTCATCTGGTAATTCATTGTTTCCTTCAACTCCTGCCACAAATGCAGGTTTTTCTTTTGGGAGTTC ATCATTTCCTTCTTCAAGTTCTGCTACAAACATTTTCAACTCTGGTACAACTTTTGGATTTGGTACCCCTGCTTCTTCTTCGGCAGTCAACTCTGTAAGC TCCAACAATGTTTCAAGTTCTTCTTTGTTTGGGTCTTCTAGTTGGCAGCCCAGAGAATCGTCTCCTTTTGGGTCCGCATTTAATCAAACATCTACTGCTT CTGTTGCTTCTACTAGCTCCCCCACAATGTTTTCGTCAACTCCTCAATTTTCATTCACTTCAGCAGCAACCACTACCTCCACACAGCCTACTTTTGGAAA TCCTAATTCTCCCTTCACATTTGGTTCAGCTCCTGTTAATAATGATCAGATGACTACAGAGGATAGTATGGCTGAAGACACTGTTCAAGCAACTCCACCA GCGACTCCTGTATTTGGTCAGCAAGCAACTCCACCAGCGACTCCTATATTTGGTCAGCAAGCAACTCCACCAGCAACTGCTGTATTTGGTCAGCAAGCAA CTCCATCGGCAACTCCTGTATTTGGTCAGCAATCTACCCCAGTTCAATCAAATTTTGTATTTGGAGCATCAACTACATCAGGAGCCAATCCTTTCCAGTT TGCCAGTCAACAGAATACTACTCCACCAAACGCTTCTCCGTTCCAGGCTTCTGGCAGCGTAGAATTTAGTGCTGGAGGAGGGAGTTTCTCATTAGGCACA GGTGGCGGTGACAAGTCTGGTAGAAGAATTGTGAAAGTTAAAGGTAGACAGCGCAAGAGGTAGGACTATTGTTTATGGAAATGGTTACTTTCTATCATTG CGGCGACAAAGAAATAAGCTCTGCCGGATATTGCTTTTTACTTAGCAATCTGGACAAGTGATGCTACTGAAAGCTAATCAAAATATACAAGCTTTTGTCT GCTTCCTTTCTCCTTCCATATTTTCTTACAGAGTGGAAGGCTGATGTTTTCCAAATTTTGTAGTTGTATGGTATGATGGAAAGTAATGTACTGTAATTGT AATGGTTTTAGGTCACAGGGTTTATGATTTGGTTAATTATAATTGCAGAAATCTGTGTTGTTGTTACTTGTACCATAACCAAAATTAAGTATGAATTTAT GGATTAGCTTGTTGTAACTTAACAGTTGCAGTGAGCAATCAGTGAATGATTATTGCTGTTTGGCTTTCTGTTTCATGTTTTGTTTGGAGACTGATAAAAT GTTTTAGTCATAATTTCATTTAGAGCCGG
• Tissue: pods
• Gene name: LI_gene_166593;
• Additional information: details;

Expression of Ll_transcript_292657

FPKM

• PAB: 3.2
• PNAB: 8.8
• PS1: 10
• PS2: 8
• PS3: 9.3
• PW1: 7.5
• PW2: 7.8
• PW3: 6.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_292657

• Blastp: Nuclear pore complex protein NUP1 from Arabidopsis with 40.68% of identity
• Blastx: Nuclear pore complex protein NUP1 from Arabidopsis with 40.1% of identity
• Eggnog: nuclear pore complex protein(ENOG410XPV4)
• Kegg: Link to kegg annotations (AT3G10650)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019461147.1)
• Pfam: Nucleoporin FG repeat region (PF13634.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;