| Id Trinity | TRINITY_DN49103_c2_g2_i9 |
|---|---|
| Name Transcript | Ll_transcript_292663 |
| Sequence | ATTTATCATCCGCTCATTTTCTCTCTCTTCCGCTGCGTTTCTCTCCGATTTTAAAACCCTAATTTTCAGTCTCTGCACTTTCTCCTTGAACCTCCTCACG AATCAACACACCTTTCTCCCTCTGTCACTGATGGCAACAGAAGAAAAAGAGAACCCATATGAAGGGTTAGGAACCGGTGGCAAATTCCGAAAACGCCCAT TCCGCAGAACCCAAACGACGCCGTACGATCGACCCTCAAATTCTCTCAGAAACCCTACAATAAACAACAACAACAACAAAAAAGGTTGGTTTTCAAAGGT TGTCGATCCTGCTCATAGACTCATCAGTTATAGTGCTCATTCTCTTTTCTCCTCTCTCTTTCGCAAGCGCCTTCCACCCCCTCAATCCAACGCTTCTTCT TCGGGTGTGGAAATAGAACAGGATGTGAGGGTCAGTCATCAGGAAGAAACCGTGTTTGTTTCGAACAATTTTTCTGGCAAGCAACAAGGAGCTGTTGGTA ATGGTGAAAGTGGTGCTCAAATTAATTCCTCTGATGGAGGCACACTAACTGAACTTGAGAAGTTACTAGGACAAAAAACTTTTACCAGATCTGAGATTGA TCACTTGACAGCACTTATGCGTTCAAGAACTGTGGATGCGCCTATGCGGGAAGAAGAGAAGCGCACAGAAGTGGTTCCTTCTGAAGCAATACTGTCTTCT GAGCGAAAGGATGAAGGTCCCAAAACACCTATAGTACAAAATAGGGTTGAAAACCATCTTGCTCTAACCCCTTATGTTACTTCGAGAGTTCCTAGTGAGG ATATCGCTTCACCTGCAGAGCTTGCAAAAGCTTACATGGGGAGCAGGCCTTCCAAGGTATTCTCATCAATGTTAAGTGGTCAAAGTCCTGCAGCAAGGGA GGGTCCAGCTTTTCTAAACAGTGATGATAACCTTCCTCTCAAATCCCCTATTATGTCAATTGTGCCAAGGACTGTTAGGCATGCTGGGGTTCATGAAAAT GGTTTTGCAAACCCAAGAAATCGTGGCAGATCTGCAATATATAGTATGGCCCGAACACCTTATGCCAGAATTTATCCAACCTCTACCCTCAAGGGGGTTG GACATGCTGAAGGTGAGCCATCATCTTCAACTCACTCTACATTGGATCATGACATGCTTTATGGATCTAAACAAGGGTCAGTAAAGCGTAGAAGTTCAGC ATTGGATAATGATGTAGGATCTGTTGGTCCTATACGTCGAATCCGTCACAAGGCTAATCTATATTCTAAAGGCTCGGGCTTACCTCCTTCTGGTAGTTCT CTATCTATTGCTAGGAGTGGACTCGGTGTTGGTGCTCCTCAACAACCCTCATCTTCCATGCGGAAGCCTATCATGTGGGATGAAGTTAAGCATAGCCATA TGGATTTACCAGAAGAAAATGTGCAAGACACTAGACCTAGTAAGAGTGGCCCTTTACCCTCAAAATCCAGCGAGATGGCTTCGAAGATATTGCAGCAACT TGATAAGATGGTTTCCCCTAAAGAGAAGTCATCTGAATCAAGGCTACCAAATGTGAATGATAAATCATCAACGAAGTTGTCCCCTTCCATGTTACATGGA CAGACTCTTCGAAGCATGGAAGCAGTAGATTCATCAAAATCGCTGGATACTGTAAAAGATAATAGATTCAATATTGCACCTGGAAAGTTGTCTGATAGTG CTCAAAAGTTAGCTTCACAGATAGACAAGGTTGAAAATGGTCATTTGAAGCTTCTTGCTCCTTCTGATGGACTTGTTCCATCTGTAACTAATGCAGATTC CAGAAATCCAAGGAATCAAACCAATTCTGCTGCGAAGTCCGTGGATTCTTTTGTGGTAAAATCTGCTTCATATCCTCCACAAAAGAAGAGAGCATTTCAT ATGAGTGCACAGGAGGATTGTCTGGACATGGATGATGATGCTTATTCTAATGGGGATATGTCCTCTGTTCTTCCCGTTGATAACAAGATGACAAGTCCCA ATGCAATGACAGTGAAGGATACCTTTGGTACTGAATCCGTTGCACAGGAGAATACCCGATCATTATCTGCAGTAATGGCATCCAAAAGTTCTACAATAAG TGAGGAAGCTCATGATAGGACTGATGATAATGCTGATGGGTCTAGGGTCGGTGCGAAAGTTGATGTATCAACCTCTTTGACATCATCTATCTCCGATCCA ACTTTTAAGCCAGCTACAGCAACTACAAGAACAAGTTTTGGTTCCCACAAATCTGCTTCACCAAATGGATCAAGTGCTATTCCTCCAGTCTTTAATTTTG AGCCATCAAAAGACATAACCAACTCTGGTACAATATTTGGTTTGGAAAAGGTTGTTTCATCAAAGGGGCTTGATGCTGATGTTCCATTAGTGAACTTTGG CAGCATTGGAAATGCTGGCAAGGTCCCCCAAATGCTATTTACTTCATCACCAGTTGTTGGTGAATCTACTTTGCCGAATTCAGGTGCTTCTTCTGACTCA AAGCTGGGGAGCTCGATCAGTTCTGCCACTGTTTCTGCTGCAACTGATTCTATGCCAAAAGTTCGTGAATCTGGTAATGTTGATGCTAAGACGAATATAG ATTCTGTTAAGCCATCAGAAATTCCTGTTTCATCTGCAGTAACAACATCATTGTTCACACCACCAACAAGTGCATTTACTTTTGGCCAAAGTAATGGATC TCTTGCTGCAAGCTCTTCACTTTCCTCACCCTTTACCAGTCAGAATGTATTCAGCAGCTCACCTCTTGCAGCAAGCAGCAGCAGCATTAGTGCCAATAGC ACTTCTTCCATAATTTCATCGAGCAGTAGCAGTTTCTCCAATCCGTTGGTGGCATCTTCATCTTCAATGACTTCCTCTTTCAAATTTGGTTCCTCTATTG TCCCATCAACAGGTTTACCTGTATCATCTTCTGTCTCAGAACCAGTGGAAACTAAGAATAGGGAAGTTGTAGGAAATGGTAATCTAAGCAGCACTGTTTT TGGTAGCTCATCTTCTGCTGTTGGAAACACAGGGAGTGGCCTTTTTGGTTTCAGTTCCTCAGCGACGACTAGCCAGTCCCAGGGTTCTGTCATTGGTTCT AGCAGCGGATCAATGTTTACTGCTCAGGCATCTCCTGCTACCAGTGGGTTTGCAACTTCTACCCAGACCCAGTCGGTTCCACTTGGCTCATCGTCATCAT CTTCATTTTTTGGGTTGACTGGGAATACATCCTTTTCATCTGGTAATTCATTGTTTCCTTCAACTCCTGCCACAAATGCAGGTTTTTCTTTTGGGAGTTC ATCATTTCCTTCTTCAAGTTCTGCTACAAACATTTTCAACTCTGGTACAACTTTTGGATTTGGTACCCCTGCTTCTTCTTCGGCAGTCAACTCTGTAAGC TCCAACAATGTTTCAAGTTCTTCTTTGTTTGGGTCTTCTAGTTGGCAGCCCAGAGAATCGTCTCCTTTTGGGTCCGCATTTAATCAAACATCTACTGCTT CTGTTGCTTCTACTAGCTCCCCCACAATGTTTTCGTCAACTCCTCAATTTTCATTCACTTCAGCAGCAACCACTACCTCCACACAGCCTACTTTTGGAAA TCCTAATTCTCCCTTCACATTTGGTTCAGCTCCTGTTAATAATGATCAGATGACTACAGAGGATAGTATGGCTGAAGACACTGTTCAAGCAACTCCACCA GCGACTCCTGTATTTGGTCAGCAAGCAACTCCACCAGCGACTCCTATATTTGGTCAGCAAGCAACTCCACCAGCAACTGCTGTATTTGGTCAGCAAGCAA CTCCACCAGCGACTCCTATATTTGGTCAGCAAGCAACTCCACCAGCGACTCCTGTATTTGGTCAGCAAGCAACTCCACCAGCGACTCCTATATTTGGTCA GCAAGCAACTCCACCAGCAACTGCTGTATTTGGTCAGCAAGCAACTCCATCGGCAACTCCTGTATTTGGTCAGCAATCTACCCCAGTTCAATCAAATTTT GTATTTGGAGCATCAACTACATCAGGAGCCAATCCTTTCCAGTTTGCCAGTCAACAGAATACTACTCCACCAAACGCTTCTCCGTTCCAGGCTTCTGGCA GCGTAGAATTTAGTGCTGGAGGAGGGAGTTTCTCATTAGGCACAGGTGGCGGTGACAAGTCTGGTAGAAGAATTGTGAAAGTTAAAGGTAGACAGCGCAA GAGGTAGGACTATTGTTTATGGAAATGGTTACTTTCTATCATTGCGGCGACAAAGAAATAAGCTCTGCCGGATATTGCTTTTTACTTAGCAATCTGGACA AGTGATGCTACTGAAAGCTAATCAAAATATACAAGCTTTTGTCTGCTTCCTTTCTCCTTCCATATTTTCTTACAGAGTGGAAGGCTGATGTTTTCCAAAT TTTGTAGTTGTATGGTATGATGGAAAGTAATGTACTGTAATTGTAATGGTTTTAGGTCACAGGGTTTATGATTTGGTTAATTATAATTGCAGAAATCTGT GTTGTTGTTACTTGTACCATAACCAAAATTAAGTATGAATTTATGGATTAGCTTGTTGTAACTTAACAGTTGCAGTGAGCAATCAGTGAATGATTATTGC TGTTTGGCTTTCTGTTTCATGTTTTGTTTGGAGACTGATAAAATGTTTTAGTCATAATTTCATTTAGAGCCGG BLAST |
| Tissue | pods |
| Gene name | LI_gene_166593; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_292663
| Blastp | Nuclear pore complex protein NUP1 from Arabidopsis with 40.68% of identity |
|---|---|
| Blastx | Nuclear pore complex protein NUP1 from Arabidopsis with 40.1% of identity |
| Eggnog | nuclear pore complex protein(ENOG410XPV4) |
| Kegg | Link to kegg annotations (AT3G10650) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019461147.1) |
| Pfam | Nucleoporin FG repeat region (PF13634.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |