Ll_transcript_292652

• Id Trinity: TRINITY_DN49103_c2_g3_i1
• Name Transcript: Ll_transcript_292652
• Sequence: AAGAAAGAAAGGTAGTGTAATATGAATTAGAGGATGGTTCCATAGATTTTGTTATTAGCTTATTTGTTGCCTATTAATTAATAGGTATAGAAATAGAAGT AGGAAAGGCGTTGTTACTCTATGAGGTTGACATGATGAATATGATGTATGCTTCCGTCCTTCTTCCCTCATCATCCTCCTATCTTATCCCATTCACTAAA ACCACTTTTACTTGTAATCTTTCAAAATCTGTTTGGACAAGAACACCATCATCATACAATAAACAACAACAACAACAACAACAACATAGACCTAGTAGAA CACAACAACCTTCACACTTGGATCATGAGGTTGACATGGATGACCTTTTATCTTCAATAAGCGAAACCCAAAATGAACAACAACTCTTCGCTCTTCTCTC TCGTTACAGTGGAAGACAACTCTCTATTCGATTCATGGTTTCACTCCTCTCTCGTCAATCTGATTGGCAGCGTTCCCTCGCCATTCTTGATTGGATCAAT CACAAGGCTCGTTACTCTCCTTCTCTCTTCGCTTTCAACGTTGTTATCAGGAATGTCCTCAGAGCCAACCAATGGCAACTCGCACACGGCCTGTTTGATG AAATGCGCCAAATGGGTCTTTCCCCTGATAGGTACACTTACTCCACCCTCATCACTTACTTTGGCAAACACGGCTTGTTTGATTCTTCTCTCTTTTGGCT CCAGCAGATGGAGCAAGACAATGTGCCCGGTGACCTTGTCTTGTATTCTAATTTGATCGAGCTTTCGCGAAAGTTGTGTGACTATTCTAAGGCCATTTCC ATCTTCACGAGATTGAAAAGCTCTGGTATTACTCCTGACCTTGTAGCATATAACTCCATGATTAATGTATTTGGGAAAGCTAAGCTCTTCCGCGAGGCAC GCCTTCTACTTCACGAGATGAGGGAAAACGGTGTTCAACCAGACACGGTCAGCTACTCCACGCTTCTCACCATGTACGTTGAGAATCATAAGTTTGTGGA AGCGCTTTCTGTGTTCTCTGAAATGAATGAAGGGAAGTGCGCACCTGATCTTACCACTTGTAATATCATGATTGATGTTTACGGCCAGCTTGACATGGCC AAGGAAGCCGACCGACTGTTCTGGAGCATGAGGAAAATCGGGATTGAACCAAGCGTGGTTAGTTATAATACGCTCTTGAGGGTTTATGGAGAGGCTGAGC TATTTGGAGAAGCCATCCAACTGTTTCGTTTGATGCAAAAAAAGTGTATACAACAGAATGTGGTCACCTACAACACTATGATTAAGATTTATGGCAAGTC CCTTGAGCATGAAAAGGCAACAAATCTTATTCAAGAAATGCAGAATAGAGGTATTGAACCGAATTCCATTACATATTCAACAATAATATCGATATGGGAG AAGGCAGGGAAACTAGATAGGGCAGCCATGTTGTTTCAAAAGTTAAGGAGTTCAGGAGCTGAAATCGATCAGGTTCTTTACCAGACGATGATTGTAGCAT ATGAAAGGGCAGGTTTAGTTGGCCATGCTAAGCGTCTACTTCAAGAGCTAAAGCAACCGGATAGCATTCCTAGGGAGACTGCCATCACGATTCTTGCTAG AGCCGGCAGAATTGAAGAGGCTACATGGATTTTCCGACAGGCTTTTGATGCCGGAGAGATTAAAGATATATCTGTGTTTAGCTGCATGATTGATCTTTTC TCGAAGAACAAAAAGTATGCAAATGTTGTGGAAGTGTTTGAGAAGATGAGAGAGGTGGGATATTTTCCGGATTCTAATGTTATTGCTCTCGTGTTGAATG CTTTCGGAAAGCTGCGGGAATTTGAGAAAGCAGATGCTTTATACGGACAGATGTATGAAGAAGGGTGTGTTTTTCCAGATGAAGTTCATTTCCAGATGCT AAGTCTTTATGGTGCAAAAAAGGATTTCAAGATGGTAGAGTCATTGTTTGAGAAGTTAGATTCCAATCCCAATATTAACAAGAAGGAGTTGCATCTTGTT GTTGCCAGCATATATGAAAGGGTAGATAGACTTAATGATTCTTCCCGGATCATGAACAGGATGAATCAAAGAGGGAATGGAAATCATGACCGCGCTTAGA AGTATGCATCTGATTTTCCTTTGTTGACTTTGTATTGTTGATTAACATTCTTTGCACATGATCATCCACAAATGCTACATTAAGAAAACTTCTGATATTC CTAACTTGGTGTCCTATCTCCTATGTATATATAATATATTGGGCAACAACACATTTCTGCCTAGCATCATCATTGGCTTAAATCCAGCGTTTATGAGCAC TATTCTTTATAGTCATGTCCTTCTGAGAAGTAAAAAATGAACCCCCTGATGCTTTTTCGTTTCAGAAAGTTGAGACACTCTCATTATATTGGTTGTGTCT GTTTTAACACAAATTTTCACTTTATTGCTCATTATTGTTTCTACGGCAAAAGTCCATTGATCAATGATCATAAAGTAGGGAAGAAAACAATATCATTACT CTTTTCTCTTGTAAAATCAATATTGATGTCAGATTAGTGTCTTAGTTCAAAGTTGCTATTTTATTTAGAGAAAAAATATGTGTGCACAATGTTGAATGAT GCACTGATTGTGTATAAATCTTTATACTGTTAGTGTAAA
• Tissue: pods
• Gene name: LI_gene_166594;
• Additional information: details;

Expression of Ll_transcript_292652

FPKM

• PAB: 0.8
• PNAB: 1.7
• PS1: 4.2
• PS2: 1.4
• PS3: 1.4
• PW1: 2.3
• PW2: 1.1
• PW3: 1.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_292652

• Blastp: Pentatricopeptide repeat-containing protein At5g39980, chloroplastic from Arabidopsis with 76.74% of identity
• Blastx: Pentatricopeptide repeat-containing protein At5g39980, chloroplastic from Arabidopsis with 76.7% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT5G39980)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019438264.1)
• Pfam: PPR repeat family (PF13041.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;