| Id Trinity | TRINITY_DN49117_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_292881 |
| Sequence | TGGCATATACTCCTCCCCTGGACAGTGTTAGTAGCAATGAAAAGAGTAGAGATTGTTACAACGTTGTGTTTGTGATATGCAATAAACGATAATGCAACCT TTCTCTTTCTCCACCTCACACTTCTCTCTTCCCACTCCTCCTCCCTTCTCTTTCTCCTCCTCCAACCACCACCACCACCACCACCACCACCACTCTTTCA TTTCTTTCTCCTTAAAACCACCACTTGATTCCAACAACTTCCGCCGCCCCACCAAACCCCTCAAAACCACCACCACCACCACTGCCGCGCCTTCTCCAAA CCCTACTAACCCTAGTTCTAACTCTAACAACCCTCTCAAACAAAAAACCCCTTCCCCTAATCCCCTTACTGGCAAGCTTTGGCTTACTAGCAAACTCTCT CCTCCTCCTCCTCCTCCGGAACGGCAATTCGTAGACCAAGTCGACGCCCCGAAACCGGAGCGCGACGAAGAAGATGGAAAGCAAAACGATGTCGTTTCTG ATGATGATAATGAGAACTTGACCATTTCTCGACAGACGGGGAAAATCTTTGTGGCGAACTTACCCTTATGGGTAAAGAAGCCGGAGGTTTTCGATTTTTT TCGCCAATTTGGGCCTATTAAGAACGTGATTTTGATTAAAGGACACAATGAGACCAAGAGGAATGCGGGGTTTGGGTTTGTCATTTACGATGGTGATGAG ACCGGGGCTGAGAATTCAGCCATGAAGGCGGTCGAGTTTGATGGGGTTGAGTTTCATGGGAGGGTTTTGACTGTGAAATTGGATGATGGGAAGAGATTGA GGGATAAGGAGTTAGAGAGGGAGAGATGGGTGAAAGGGAATGGTGATAAGGGAGAGTATCGTTCTAAGTGGCATGAGGAGAGGGATGGGTCTAGGAAGGA GTTCCAAAAGGTTCTTGAGACCGAGCCCGAGAATTGGCAGGCTGTTGTAAGCGCTTTCGAGAGAATTAAGAAGCCTGCTAGAAAAGAATATGGCTTGATG GTTAAATATTATGCGAGACGAGGGGACATGCATCATGCACGTCAAGCATTTGAGAGTATGCGAGCTAGAGGAATAGAGCCATCTTCACATGTGTACAGTA GTCTTATTCATGCTTATGCAGTTGGTAGAGACATGGAAGAAGCATTACATTGTGTTAAAAAGATGAAGGAAGAGGGCATTGAAATGACTATAGTGACATA CAGTATAATTGTGGGAGGATTTGCTAGAATGGGCAATGCTGAATCAATGGTTTAACGAGGCCAAAGAGAGGCTTACTGATTTAAACGCAATCATTTATGG GAACATAATATATGCACACTGGTGAGCATTCAGATTTCTTTTGTGTTCAATTTTGCATGTATGATAGAAACCTTTTTATTATCATATGTTGTATGCCGAT TATTACCGCATGGAGTGTTATCATTTAAATTTGCTTGTGTCCTTGCCTTCTCTTCCGTTTATACTTTTATGTTACATGTGCTAACTGTATTGAGAAAATT GCTTTAAACTTATCTATGTAGCAATGTTAACCAAGACAGAAACATTTACCACTCACGTGTTTGATTAAATCCATATTTGGTAAACCATTAGCGAGGTCAA CAATTCAATTAGTTACTTGTGTGGTTAATGTTTTCATCGTGGTAAGTATTGTTACTTAGATTTCTGCTTTCTGAAGTTTCCCAATTTTGT BLAST |
| Tissue | pods |
| Gene name | LI_gene_166692; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_292881
| Blastp | Pentatricopeptide repeat-containing protein At5g04810, chloroplastic from Arabidopsis with 57.74% of identity |
|---|---|
| Blastx | Pentatricopeptide repeat-containing protein At5g04810, chloroplastic from Arabidopsis with 61.51% of identity |
| Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
| Kegg | Link to kegg annotations (AT5G04810) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019461472.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |