Ll_transcript_292882

• Id Trinity: TRINITY_DN49117_c0_g1_i2
• Name Transcript: Ll_transcript_292882
• Sequence: TGGCATATACTCCTCCCCTGGACAGTGTTAGTAGCAATGAAAAGAGTAGAGATTGTTACAACGTTGTGTTTGTGATATGCAATAAACGATAATGCAACCT TTCTCTTTCTCCACCTCACACTTCTCTCTTCCCACTCCTCCTCCCTTCTCTTTCTCCTCCTCCAACCACCACCACCACCACCACCACCACCACTCTTTCA TTTCTTTCTCCTTAAAACCACCACTTGATTCCAACAACTTCCGCCGCCCCACCAAACCCCTCAAAACCACCACCACCACCACTGCCGCGCCTTCTCCAAA CCCTACTAACCCTAGTTCTAACTCTAACAACCCTCTCAAACAAAAAACCCCTTCCCCTAATCCCCTTACTGGCAAGCTTTGGCTTACTAGCAAACTCTCT CCTCCTCCTCCTCCTCCGGAACGGCAATTCGTAGACCAAGTCGACGCCCCGAAACCGGAGCGCGACGAAGAAGATGGAAAGCAAAACGATGTCGTTTCTG ATGATGATAATGAGAACTTGACCATTTCTCGACAGACGGGGAAAATCTTTGTGGCGAACTTACCCTTATGGGTAAAGAAGCCGGAGGTTTTCGATTTTTT TCGCCAATTTGGGCCTATTAAGAACGTGATTTTGATTAAAGGACACAATGAGACCAAGAGGAATGCGGGGTTTGGGTTTGTCATTTACGATGGTGATGAG ACCGGGGCTGAGAATTCAGCCATGAAGGCGGTCGAGTTTGATGGGGTTGAGTTTCATGGGAGGGTTTTGACTGTGAAATTGGATGATGGGAAGAGATTGA GGGATAAGGAGTTAGAGAGGGAGAGATGGGTGAAAGGGAATGGTGATAAGGGAGAGTATCGTTCTAAGTGGCATGAGGAGAGGGATGGGTCTAGGAAGGA GTTCCAAAAGGTTCTTGAGACCGAGCCCGAGAATTGGCAGGCTGTTGTAAGCGCTTTCGAGAGAATTAAGAAGCCTGCTAGAAAAGAATATGGCTTGATG GTTAAATATTATGCGAGACGAGGGGACATGCATCATGCACGTCAAGCATTTGAGAGTATGCGAGCTAGAGGAATAGAGCCATCTTCACATGTGTACAGTA GTCTTATTCATGCTTATGCAGTTGGTAGAGACATGGAAGAAGCATTACATTGTGTTAAAAAGATGAAGGAAGAGGGCATTGAAATGACTATAGTGACATA CAGTATAATTGTGGGAGGATTTGCTAGAATGGGCAATGCTGATGCTGCAGATCAATGGTTTAACGAGGCCAAAGAGAGGCTTACTGATTTAAACGCAATC ATTTATGGGAACATAATATATGCACACTGTCAAGCTTGCCATATGGATCGAGCCGAAGCCTTGGTGCGGGAGATGGAAGAACAAGGGATAGATGCTCCCA TTGACATATATCATACCATGATGGATGGTTATACAATGATTGGCAAAGAAGATAAATGCTTGATTGTGTTTGACAGACTGAAGGAATGCGGTTTCTCTCC CTCGGTCATCAGCTATGGTTGTCTTATTAATCTTTACACCAAGATAGGAAAAGTTTCTAAAGCATTGGAGATTAGCAAAATAATGAAAATGGCTGGCATA AAACATAACATGAAGACTTACTCTATGTTGATTCATGGATTCTTGAAGTTAAAAGATTGGGCTAATGCATTCTCCATTTTTGAAGATATTACTAAAGATG GTTTAAAGCCTGATGTAGTACTCTACAACAACATTGTAAGTGCTTTTTGTGGGATGGGTAATATGGATCGTGCCATTTGTATTGTCAAGAAAATGCAGAA GGAGAGGCATAGACCTACAACACGCACATTTTTGCCCATTATACATGGCTTTGCAAGGGCTGGGGAGATGAGGAAAGCCCTTGAGATCTTTGATATGATG AGGAGAAGTGGCTGTATTCCTACTGTGCACACATATAATGCTCTTCTTCTTGGTCTTGTTGAGAAGCGTCAGATGGAAAAGGCTGTAAGAATATTGGATG AAATGAATCTGGCTGGCATAAGCCCAAATGAACGTACATATACAAATCTTATGCATGGTTATGCTTCACTTGGCGATACTGAAAAAGCATTTCAGTACTT CACAATTATGAAGAACGTCGGCCTGGAGATTGATGTATATACTTATGAGGCATTGCTGAAGGCATGTTGCAAGTCAGGCAGAATGCAGACTGCCCTAGCA GTCACAAAAGAAATGAGTACCCGAAAGATTCCCAGAAACACTTTCGTCTATAATATACTAATTGATGGGTGGGCTCGGAGAGGTGACGTTTGGGAGGCTG CAGACCTAATGCAACAAATGAGAAATGAAGAAGTTCAACCGGACATCCATACTTACACTTCTTTTATTAATGCTTGTAGTAAAGCTGGGGATATGCAGGT ATGATATTTGTTAAGAAAATAATTTATTATCATTTCCTTGTTAAGTTGATGACTACTTGTGGTGGACTAAAAGTAAAGGTATTATTGTGTCATTTCATTC ATCCCCATCATCATTTAGCATACGAATGAATTGTGCGGGAAAACATTGCTTGTTATGCATCTCATTTCAGTTCTTTCTGCATACTTTCATGAAAGGTCTT TGTGATTTGTGTTTGACATTTTTCATGATAATCATCCTGGGCTTGTTGTGTTAAACCTCCTCGAATCTTGGCGTTTGATTGAAAGCAACAGAGATTATAA AAGAAATGGAAGCATCTGGTATAAAACCAAACCTCAAAACCTACACCACTCTTATACACGGTTGGGCGCGTGCTTCTTTACCAGAGAAGGCTCTAAGATG CTTTGAAGAGATGAAAGTGGCTGGATTGAAACCAGACAAAGCAGTATACCATTGTCTTATGACATCTTTGTTATCAAGAGCCACCTTTGCTCAATCATAC ATATATAGTGGACTATTGTCTGTATGTAGAGAGATGATAGAATCCGAGATGACTGTTGACATGGGAACTGCAGTCCACTGGTCGAGATGCTTACTCAAGA TCGAGAGGACGGGAGGAGAACTAACGGAAGCACTACAAAAGACATTTCCACCGGATTGGACATCACATCATGTTGATGTTAATTCTGGAAAAGAAACAGC TGATCCGGAAATCGTTGTTGATGATGATGATGTATATTATGGCAATGGAATCAGTAATGATGAGGACAATGATGATGAAGATATTGATAATGATATGTAA TACAGGTCATGGTTTTGAGTTGTCATTGTAAATGTAAATGGGCAGAATGCCATGGTGGCATGCAAGTTTTTTCTGCCTTAAATTCTTCACCTATTAAAGA TACGAATAGACAAAAAATAGTGGTATCCTTTGACCAGACCCATGAGTTTTCAGGTGTTTGGAACATAGCTTCAAATTTCATCTTGTAATTCTCCTTGCAT TTCACAGCTTTTAACCAAGATGTGTTTGGTGAAATTGAAAATTTAGCACTAAGTTTTTATTTCATTAGAACGTTATTAATTTTAGC
• Tissue: pods
• Gene name: LI_gene_166692;
• Additional information: details;

Expression of Ll_transcript_292882

FPKM

• PAB: 0.1
• PNAB: 0
• PS1: 0
• PS2: 0.5
• PS3: 0.2
• PW1: 0
• PW2: 0
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_292882

• Blastp: Pentatricopeptide repeat-containing protein At5g04810, chloroplastic from Arabidopsis with 63.12% of identity
• Blastx: Pentatricopeptide repeat-containing protein At5g04810, chloroplastic from Arabidopsis with 69.58% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT5G04810)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019461472.1)
• Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;