Ll_transcript_292885

• Id Trinity: TRINITY_DN49117_c0_g1_i5
• Name Transcript: Ll_transcript_292885
• Sequence: TGGCATATACTCCTCCCCTGGACAGTGTTAGTAGCAATGAAAAGAGTAGAGATTGTTACAACGTTGTGTTTGTGATATGCAATAAACGATAATGCAACCT TTCTCTTTCTCCACCTCACACTTCTCTCTTCCCACTCCTCCTCCCTTCTCTTTCTCCTCCTCCAACCACCACCACCACCACCACCACCACCACTCTTTCA TTTCTTTCTCCTTAAAACCACCACTTGATTCCAACAACTTCCGCCGCCCCACCAAACCCCTCAAAACCACCACCACCACCACTGCCGCGCCTTCTCCAAA CCCTACTAACCCTAGTTCTAACTCTAACAACCCTCTCAAACAAAAAACCCCTTCCCCTAATCCCCTTACTGGCAAGCTTTGGCTTACTAGCAAACTCTCT CCTCCTCCTCCTCCTCCGGAACGGCAATTCGTAGACCAAGTCGACGCCCCGAAACCGGAGCGCGACGAAGAAGATGGAAAGCAAAACGATGTCGTTTCTG ATGATGATAATGAGAACTTGACCATTTCTCGACAGACGGGGAAAATCTTTGTGGCGAACTTACCCTTATGGGTAAAGAAGCCGGAGGTTTTCGATTTTTT TCGCCAATTTGGGCCTATTAAGAACGTGATTTTGATTAAAGGACACAATGAGACCAAGAGGAATGCGGGGTTTGGGTTTGTCATTTACGATGGTGATGAG ACCGGGGCTGAGAATTCAGCCATGAAGGCGGTCGAGTTTGATGGGGTTGAGTTTCATGGGAGGGTTTTGACTGTGAAATTGGATGATGGGAAGAGATTGA GGGATAAGGAGTTAGAGAGGGAGAGATGGGTGAAAGGGAATGGTGATAAGGGAGAGTATCGTTCTAAGTGGCATGAGGAGAGGGATGGGTCTAGGAAGGA GTTCCAAAAGGTTCTTGAGACCGAGCCCGAGAATTGGCAGGCTGTTGTAAGCGCTTTCGAGAGAATTAAGAAGCCTGCTAGAAAAGAATATGGCTTGATG GTTAAATATTATGCGAGACGAGGGGACATGCATCATGCACGTCAAGCATTTGAGAGTATGCGAGCTAGAGGAATAGAGCCATCTTCACATGTGTACAGTA GTCTTATTCATGCTTATGCAGTTGGTAGAGACATGGAAGAAGCATTACATTGTGTTAAAAAGATGAAGGAAGAGGGCATTGAAATGACTATAGTGACATA CAGTATAATTGTGGGAGGATTTGCTAGAATGGGCAATGCTGATGCTGCAGATCAATGGTTTAACGAGGCCAAAGAGAGGCTTACTGATTTAAACGCAATC ATTTATGGGAACATAATATATGCACACTGTCAAGCTTGCCATATGGATCGAGCCGAAGCCTTGGTGCGGGAGATGGAAGAACAAGGGATAGATGCTCCCA TTGACATATATCATACCATGATGGATGGTTATACAATGATTGGCAAAGAAGATAAATGCTTGATTGTGTTTGACAGACTGAAGGAATGCGGTTTCTCTCC CTCGGTCATCAGCTATGGTTGTCTTATTAATCTTTACACCAAGATAGGAAAAGTTTCTAAAGCATTGGAGATTAGCAAAATAATGAAAATGGCTGGCATA AAACATAACATGAAGACTTACTCTATGTTGATTCATGGATTCTTGAAGTTAAAAGATTGGGCTAATGCATTCTCCATTTTTGAAGATATTACTAAAGATG GTTTAAAGCCTGATGTAGTACTCTACAACAACATTGTAAGTGCTTTTTGTGGGATGGGTAATATGGATCGTGCCATTTGTATTGTCAAGAAAATGCAGAA GGAGAGGCATAGACCTACAACACGCACATTTTTGCCCATTATACATGGCTTTGCAAGGGCTGGGGAGATGAGGAAAGCCCTTGAGATCTTTGATATGATG AGGAGAAGTGGCTGTATTCCTACTGTGCACACATATAATGCTCTTCTTCTTGGTCTTGTTGAGAAGCGTCAGATGGAAAAGGCTGTAAGAATATTGGATG AAATGAATCTGGCTGGCATAAGCCCAAATGAACGTACATATACAAATCTTATGCATGGTTATGCTTCACTTGGCGATACTGAAAAAGCATTTCAGTACTT CACAATTATGAAGAACGTCGGCCTGGAGATTGATGTATATACTTATGAGGCATTGCTGAAGGCATGTTGCAAGTCAGGCAGAATGCAGACTGCCCTAGCA GTCACAAAAGAAATGAGTACCCGAAAGATTCCCAGAAACACTTTCGTCTATAATATACTAATTGATGGGTGGGCTCGGAGAGGTGACGTTTGGGAGGCTG CAGACCTAATGCAACAAATGAGAAATGAAGAAGTTCAACCGGACATCCATACTTACACTTCTTTTATTAATGCTTGTAGTAAAGCTGGGGATATGCAGAA AGCAACAGAGATTATAAAAGAAATGGAAGCATCTGGTATAAAACCAAACCTCAAAACCTACACCACTCTTATACACGGTTGGGCGCGTGCTTCTTTACCA GAGAAGGCTCTAAGATGCTTTGAAGAGATGAAAGTGGCTGGATTGAAACCAGACAAAGCAGTATACCATTGTCTTATGACATCTTTGTTATCAAGAGCCA CCTTTGCTCAATCATACATATATAGTGGACTATTGTCTGTATGTAGAGAGATGATAGAATCCGAGATGACTGTTGACATGGGAACTGCAGTCCACTGGTC GAGATGCTTACTCAAGATCGAGAGGACGGGAGGAGAACTAACGGAAGCACTACAAAAGACATTTCCACCGGATTGGACATCACATCATGTTGATGTTAAT TCTGGAAAAGAAACAGCTGATCCGGAAATCGTTGTTGATGATGATGATGTATATTATGGCAATGGAATCAGTAATGATGAGGACAATGATGATGAAGATA TTGATAATGATATGTAATACAGGTCATGGTTTTGAGTTGTCATTGTAAATGTAAATGGGCAGAATGCCATGGTGGCATGCAAGTTTTTTCTGCCTTAAAT TCTTCACCTATTAAAGATACGAATAGACAAAAAATAGTGGTATCCTTTGACCAGACCCATGAGTTTTCAGGTGTTTGGAACATAGCTTCAAATTTCATCT TGTAATTCTCCTTGCATTTCACAGCTTTTAACCAAGATGTGTTTGGTGAAATTGAAAATTTAGCACTAAGTTTTTATTTCATTAGAACGTTATTAATTTT AGC
• Tissue: pods
• Gene name: LI_gene_166692;
• Additional information: details;

Expression of Ll_transcript_292885

FPKM

• PAB: 2.5
• PNAB: 6.6
• PS1: 3.3
• PS2: 2.3
• PS3: 3.3
• PW1: 4
• PW2: 3
• PW3: 2.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_292885

• Blastp: Pentatricopeptide repeat-containing protein At5g04810, chloroplastic from Arabidopsis with 64.78% of identity
• Blastx: Pentatricopeptide repeat-containing protein At5g04810, chloroplastic from Arabidopsis with 70.17% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT5G04810)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019461472.1)
• Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;