Ll_transcript_292894

• Id Trinity: TRINITY_DN49117_c1_g2_i1
• Name Transcript: Ll_transcript_292894
• Sequence: TCTAGCTTCTTGGCTTAGCACCTTGATACTGTGGTTACTACCAATGGGAGAAGAAAAAGTAAATGTTTGCAACAACAAATTCAAACACTTTCAAGAACCC ATTTTGATTTCAAATACTGAATCTTCTTCTCAACCCTTTCTCTCATTCTCTCACTTTCCCTTTTCTATATAACCCACTCTTCACAAAAACCCTCTTTTTT TGCCTTCAATTACTTTATTACCCTTTTCTTCTTTCAATGGCTTCTACCCCTTCACCCCAATGTTCTTCTCTCCCTTCTAGGCCTGAAAACACCACCAGCC ACCGTCATCACCACCATAACACCACCACCACCACCACCACCAACCACCACAACAGCAACAGCAACAGAAACAACAACCTTAGACACTGTAATAACAGAAA CAACAACCTCAGACACCATAACAGTTATAACAATAACCGTTTTTCTTCTTATAACAGGTATTCATCCAATGCTTCTAATGGGAATGGAGCAAATTATGGG TCTGGTTCAGGTGTTGGTGGTGGTGGTGGTGGTGGTGCTGTGTCTGCTGCTGCTGCAGCTGCTACTGGTGGTGCTATCGGGTTTTCGAGCTCGTTTATTG GTGGTGTTAGGAAGACTGGACTTGGGCATGAGTTCTCTGGGAGGCGGTCTACTCGGTTTGTGTCAAAGATGTATTCTGTTCAGACTAGGGCGAGCTCGAA TAAGAACTACCATTCGGCTGTCGCTGACGAGGCGCTACGATGTTTGGTTAAAGCTGGTAATGATTGCTCTGCTATTGATAATGTGCTGCTTAGTTTCGAG AATAGGCTTGTTCGGGTCGAGGATTATATTTATTTGCTTAAGGAGTTTGTGAATGAGGGTACTTACTTGTTAGCGAATAAGTGTTATGATTTTGCTATGG GGATATGGAATGGTTGTGGTACAAGGCTTGAGAGGGGGAAGTTGACTAGTACTATGATTGGTACACTTGGGAGGATGAGAAAGGTTGATGATGCTAGGAG GCTTTTTGAGTTTGCTAAGAATGAAGGGTATGGAAACACCGTTTACTCGTATTCGTCGATGATTAGTGCGTTGGGGCGTAATGGGCGGTTTCATGAGGCT GTGAGTTTGTTCTGGGCCATGAGAAACTCTGGGATGGAGCCGACCTTGATTACTTATAATTCGTTGATCGATGCAGGCGCAAAAGCGCAAGTGGAGTTCA GCAAAGTTGTGAAGTTTTTTGATGAATTGGTTACCAAGGGCATAAAACCCGATCGGCTTACTTATAACTCACTTCTTTCAGTTTGTGTCCCAAGAGGTTT GTGGGAAGTGGCTCAAAATTTGTTAGCTGAAATGGAGCAAAGAGGTATCGACCGGGATGTCTATACTTATAATACATATTTGGACACATTGTGTAAAGGT GGGCAGATGGATTTGGCCGGGAAAGTTATGACAGAAGAGATGCCCGCTAGGAAAATTTATCCGAATGTAGTGACTTATAGTACTATGATGGATGGATATG CAAAGGCGGGAAGGCTTGAAGATGCGTTGTATTTGTACAATGAAATGAAGCGTCTGTCGATTCGCTTTGATAGAGTGTCTTACAATACACTTGTTGCAGT TTTTGCAAAGCTTGGTCTGTTTGAGGAGGTAAGGAACATCATCAAAGACATGGAGAGTTGTGGGCTAACGAAGGACGTTGTGACATATAATGCACTTTTA GGTGGCTACGGGAAGCATAGCATGTATGATGAAGTTAGGAGACTATTTGAAGAGATGAAAGCAAAAAATATACATCCAAATATGTTAACTTATTCAACAA TGATTGATGTGTACACCAAAGGTTGTATGTATATGGAGGCAATGGATGTGTATAAAGAATTCAAGAAGGAAGGGTTAGAAGCAGATGTTGTGTTTTATAG CTCACTAATTGATGTGCTATGCAAAAATGGTTTAGTAGAATGTGCTATGATGTTGCTTGAAATGATGACGGAGGATGGAATTAGGCCCAATGTTGTCACT TACAACTCCATAATTGATGCATTCGGTCAAGTTATGGGATTGGAATGGAGATCTGATACTTCTTTTGAAGCCGATGAGCATCAAAGTACACGTAATTCTT CTCAACTTGTGGATACTTTTCAAAGCCAGGTTGGAGATAAGGAGGATGACCGAGTCCTGAAGATGTTTGAGCAACTTGCAGTGGATAAATCCGGTCATAC GAACAAGGATCTGAGGAACAGACAAGACAAATTCAACATATTGTGGATCCTTAACAAAATGCATGAACTGAAAATTAAACCAAATGTTGTAACATTTTCT GCCATTTTGAATGCTTGCAGCCGTTGCAATTCATTTGGAGATGCTTCGAAATTGTTGGATGAGCTCTGCTTGTTTGATAACCAGGTCTATGGTGTAGCCC ATGGACTACTTCTGGGTTACCGGGAAAACATATGGTTTAAAGCTCAATCTTTGTTCGATGAAATCAAACACATGGATTCTTCAACAGCATCTGCCTTTTA TAATGCCCTTACTGATATGTTATGGCATTTTGGTCAGAAACGAGGCGCCCAGCTGGTTGTTCTTGAAGGAAGACGTCGGAATGTATGGAAGGGTGACTGG TCCGAATCTTGCCTGGACCTGCATCTGATGTCTTGTGGAGCTGCTTGTGCAATGGTGCATGCATGGTTGCTCAATATACGCACCGTCGTTTTTGAAGGCA GTGAACTGCCAAAACTATTGAGTATTTTAACTGGATGGGGCAAGCATAGCAAAGTCGTCGGCGACGGTGCTTTAAGAAGGGCTGTTGAGGCACTCCTGAA TCGCATCGGAGCACCGTTTCGGAATGCTGAATGTAACATAGGGAGGTTTATATCACCAGGATATGTTGTTGCTGCATGGTTGAAACAATCCAGCACTCTG AATGTGCTTGTTCTGCATGATGACATAAGTGATTCTAGGCCTGTTGGTCAAGTGTATAACTTGCAAGCTCTGTGCATGTAGTTACAACTATCATGTTTAA TACCCTAGCCAGTGATGGCTCTAGTAAGTGTTACATGGGCAAAATAGTACTGAATACATTATTTATATTTGACTCTATCTTTCCTTAATTTTACTTTCCT CAATTCAATGAATGTATTGGCAATGGACTCTTCTGAAGTTTTCCATATCAAAAAGTTAACAAATAGTGTGAAGTAATGTTCCTTTC
• Tissue: pods
• Gene name: LI_gene_166694;
• Additional information: details;

Expression of Ll_transcript_292894

FPKM

• PAB: 2.4
• PNAB: 34.7
• PS1: 20.5
• PS2: 9.2
• PS3: 13.9
• PW1: 16.9
• PW2: 13.6
• PW3: 8.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_292894

• Blastp: Pentatricopeptide repeat-containing protein At2g31400, chloroplastic from Arabidopsis with 54.03% of identity
• Blastx: Pentatricopeptide repeat-containing protein At2g31400, chloroplastic from Arabidopsis with 56.11% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT2G31400)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019452137.1)
• Pfam: Pentatricopeptide repeat domain (PF13812.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;