| Id Trinity | TRINITY_DN49119_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_293155 |
| Sequence | GTTTGCCCCACATACCTGTGGATGTTTCCGGCTCGGACATGATTGCCTCCGGTGTGAGGATACCTGTGGGAAACCAAAAAAAATAATATTGGACTTTCCT TCGTATATATCTTAAAGGATCATGTCTTATAGCATCTTGATGTATTTGCTTGTGCCTGCTAGTTCTAATTAAATTATCTTCTATATTATGTTTTTGTTGA GTAGCAGCCATTGAAATTACTTTGTTTTTGAAGTATTATATAAGAAGCTGAAAAGTAAAAGGAGAACAAGTCCATTTTTTGGGGCAAATTGAGTGAATAC CATATGGAATATGCTTCTATGATGTGGAATGCTTTAGTTTATTATTTTCCTAACCTATGTCATATTGCTTCAAATATTCCCTTGTTTGTGGAAGGGCATG ATGATGGAATGTTACTTTTGTGCTTGTCGATTTATTGTCGAATACCTTTTCGTTCATTCTGGTATTACTTTAATATGTTCTAATTTGTCAATTATTTTTG GCAGCCTGGCCCAAGGGAGCATCTTCTCCAGTGCTTTATTAAGCGCAACCGGTCCACACAAACATATTACTTGTATCTCAATTTAACTAGTAGTGAGTAT ATAATGAAACTTTTTAGTTAATGTTGTCCCGTAAAAACTTTAGTTTCTTTGTTTTGCTTTGAGATGTCATGCTTTTAATTCTAGTACCGTGTTCCTTTTT ACCATCGTTGTCTTCAATTCAGCACTAGGTGATGACGGGAAGTTCCTTCTGGCTGCACGAAAGTACAGACGTCCCACCTGCACGGATTATATGATCTCTC TAGATGCAGATGATATGTCAAAGGGAAGCAATGCCCATGTTGGGAAACTGAGATCAAATTTCCTCGGAACCAAGTTTACAATCTATGATGCCCAGCCGCC TCATGCCGGGGCAAAGATTCCAAAAAGTCGCTCCACTAGGTTGGTGAATCTTAAACAGGTTTCACCCAGGATTCCTACAGGCAACTATCCAGTGGCACAC ATCTCATTTGAGTTGAATGTGCTTGGCTCCAGGTAAGCTTTCATACCGCCAATTCGACATAGATAATCCTGCATGAAATGTATCGGATAGTTCTATATGC ATATGTTTGGACTGGCCATCTGTAGTTTTCTTTCTTTGACGGGTAGTAATGTTGAGTGGTCTTACTGTGCATTCTTCTTATATACTGACTTGTACAATAC GTAACGTGTTGTGACTAGGGGGCCTAGGAGAATGGATTGTGTCATGGATTCTATTCCTCACTCTGCAATTAAACCAGGAGGAGTAGCCCCGACACAGACT GAGCATTGTCTTAAAAACGTAGATATGTTTCCTTCATTCTCTTTTTCTCGATCAAAGTCAAACCATGTGGAAAACTCCGTATCTGGGCCTCTTGGTGACA GAAACGATGGAGGGTTAGTGTTGAAAAACAAGGCTCCCAGGTGGCACGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCACGGACGTGTGACAATTGCCTC AGTTAAAAACTTTCAGCTGGTGGCTTCTCCGGAAAATGGACCTGCTGGACCAGAACATGATAAGATCATTCTCCAATTCGGAAAAGTCGGGAAGGATGCG TTTACGATGGATTACCGGTACCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATAGCATGTATGAA CAGGTATTCATTTCAAATCCTCACATTCTAAAATTTGAATACACCTGAGATAAAGCATAATCAGATCGATAGAAATCTATACAAGACAGAAATTCCATAC CGAGCAAATGCAACTTTGTCTTAGATTGCATTAGTTCCTATTTCCAAAAGTCAATAGCATGATTATGTTTCCAAAGTAATTCCATGTATAGTTTTTCAGC CAATTGATGATGTTTTACTTCATTTTCATGCCAGATTTATATTGCTATCTCTTTAGCTCTTGGATGGTGAAGAAGTGAATTTAAAAGGAAGATATTGCAT ATTTCAGAATTTTAGTTAGTTTCTGGAATCACAATTCATCACTTCTTGGAAGAATCACATGATATTTGAATGTTACTTAGAAGTTGTGTATCAACTTCCC CATGTAAATAAATTATCTTTTTCCTTTTCTGTTTGTATTTTTTAACATGGTCTTAATTATTTGCCTTAATTAGGTTGTTCATAACTTTATATAGATTTTA TTCTACTTCCTTTTTAAATCCACTATCTTTCAGCCTATAATTTACTTGTTATCCATGGTTCCTTAATTGAATATCAAATTACTAAATATTAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_166708; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_293155
| Blastp | Tubby-like F-box protein 6 from Oryza sativa with 71.71% of identity |
|---|---|
| Blastx | Tubby-like F-box protein 8 from Oryza sativa with 42.97% of identity |
| Eggnog | tubby like protein(ENOG410XQFT) |
| Kegg | Link to kegg annotations (4332845) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_003594006.1) |
| Pfam | Tub family (PF01167.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |