Id Trinity | TRINITY_DN49126_c3_g2_i10 |
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Name Transcript | Ll_transcript_290948 |
Sequence | TGATGGTGGAGGTGAATTCATATCTAATGCATTCAAGTCACATTGTGAGGAGAATGGTATTAGGCATGAAATCACTGCTCCCTATACACCTCAGCATAAT GGCTTGGCTGAGAGAAGAAACAGGTCAATAATGAACACAACAAGGAGTCTATTGAAAGAGAAGGGCCTGCCACAGAAATTCTGGGGTGAAGCAGTGTCAA CTTCATCCTATATACTCAACAGAAGTCCAACAAAGCAGCTAAATGGTAAAGTACCAATTGAGGTTTGGTCTGGACAGAAACCTAGTGTGAGCCATCTGAA AATATTTGGGTCATTAGCTTTCAAGCATGTCCTGATCAGACTAGAACCAAGTTGCAAGACAAGAGTGAAGCTATGGTACTCATTGGATACCATCCAACAG GTGCCTACAAACTCTACAATCCAATCAAGGATTGTGTGCAAATTAGCAGAGATGTCATAGTCTTAGAGGATGAAAGCTGGATTTGGGCAGAAAACAAGAC TAGTCTTAACAAACCAGTGCCTGAAATTGATGATGCTGCAACCAACACAGTTGATGCTGCAGCAACAACAACTGATAATGAGCCAACCATTGAAACTTCA ATAAGTGAAACTCAGAATGCTCAAAGATCACAGAGAATGAGATCAAGACCAGCAAGATTTAATGACTATGAGCTACATCTTGACAATGAAATCAGTGATG AAGGGGAATTGGTACACTTTGCTCTCATGGCTCTCTTGGCAGAAGCAGAACCAATTAATGAGAAAGATGCCTTGCAAAACTCAGTATGGAAGAGAGCAAT GGATGAAGAAATCAAGTCCATAGAGAAAAACAACACTTGGAATCTGGTTGAATTACCACTTGACAAACATAAAATTGGAGTCAAGTGGGTGTTCAAGCAA AAATTCAACCCTGATGGATCTATATCCAAGTACAAGGCAAGATTGGTGGCAAAGGGCTTTCTACAAAAGGAAGGGCTAGACTACACTGAAGTGTTTGCAC CTGTAGCCAGGATTGAAACAATCAGATTAGTCATTAGCATGGCTTGTGCAAAAGAACGGCAGATGTTTCAACTTGATGTTAAATCTGCCTTCTTGCATGG TCCTCTTCAAGAAGAAGTATATGTCCAGCAGCCTCCTGGATACATCATTGAAGGGAAAGAACATCTTGTCTACAAGTTGAGTAAGGCACTATATGGACTC AAGCAAGCTCCAAGAGCCTGGAACAAGAGAATAGATTCATTTCTCTTTAAACAGCAATTTGAAAAATGTGAAGTAGAGCATGGTGTGTATGTTAAAGAGA GCAGAGATGGGAATCTAGTAATCATTTGCTTGTATGTGGATGACCTATTAATCACAGGGTCAAATCCAAGAGGAATTGCAGAAGTAAAAAGGGTGTTAGA GGCAGAATTTGAAATGACAGATCTTGGCAAGTTGAGCTATTTTCTTGGCATGGAATTCTCCTACACCCCTACTGGTTTGTTGATGCATCAAAGCAAGTAT GCTAAGGAATTGTTGATCAAGTACAACATGAATTCGTGCAATCCAGTCTCAAGTCCAGTAGAAACAAACTTAAGGCTTACCAATGATGAAGGTGGTGAAG CAGTTGATGCCACACAATGCAAGCAAATAGTAGGATCATTGAGGTTCTTATGCAACACAAGACCTGATCTTATCTATGGGGTAGGACTGGTTAGCAGATT CATGAGCAATCCCAAGAAGTCTCATATGCTGGCAGCAAAAAGATTGTTGAGATATGTGAAAGGAACAACAGATTTTGGTGTATTGTTTCCACTGAAATTG CAGAAACCAGAGCTGGAACTAACTGGATATGCAGACTCTGATTTTGGAGGTGATTTGGTTGAGAGAAAGAGTACTTCTGGATACTTATTTTTGCTAAATG GTGCAGCTGTTTCTTGGTGTTCTAAAAAGCAACCAGTGATAGCTTTGTCTAACTGTGAGGCAGAATACATTTCAAGTAGTTATGCAGCATGCCAAGCAGT TTGGCTTGAAGAATTGATCAAGGAGATGAAGATCAAAATCAGATCACCATTGCAGCTAAAAGTTGATAACATTTCAGCCATAAGCTTGTCCAAAAATCCA GTAAGTCATGGTAGGAGCAAGCACATAGAAGTTAGATTTCATTTTCTAAGGAATCTAGTGACCAAGAAGAGGTTGAAGCTGGAATATTGCAGAACTGAGT TACAACTAGCTGATGCATTTACAAAGGCATTGAAGATTGGAAGATTTGAAGAATTAAGGAAGAAGATGGGCATAGAATCTCTTAGGAACTTGTCTTAAGG GAGGATGTTAGAAGTGTATAATCCAAGTGTTTGTAGCTTAGTGTTAGTTGAGTTTTAAACAAACTTTCCTGTTATAGTAACTGTGAATTTGAAATTCTGT TTTAGTGGTTGTAAAGTTTCTATATAAGGAAAGTTCCTCTCATTATGCAATTTGAACAAAGTGCTTGAAGCTTTAATCAAAGACTTACAATTTCTTCTCT TCTTTTCTGTTTTAGCTCTAACACCAGACACTTCAGAATTTGGTTGGTATGAATGTGTAGAAACCTGCTGCTGAAGTGTTTCAAGCCCAATAAGTTGTTG TAGTGTTTTGGTTAATGTGGTTGTTCATGTAAAGAATAAAACTTGTTTTGAAGAGGAACTTCCCTTACTTGAGGATGAGAATAGGTTAACCCATTTATTC TCATCTCATATGCTTCAAATATTTTTATATATCATATTTCTTATATACCATATTTGTTATCTTTATTATTATTGTTATTGACAGATGGAAGCATATTTAT CATCTTTGCATTTGTACTTAAGTGTTGTACTGGTGTATGAGAGAATGCTCTAACAAACATTGTCTCCTTCAGATAATATTGTACCTTTTCTGATTGGTCA GTTCAGCTTGCTTTGGATTGATCAACAACAACTCCTCAAATTCAAAGTTGATATTGTTGAAAGTGAATGAGGATGGGGTGCCTAACTCATAAAGCACTAA CTCATATCTGACTCTGAGATGGAATAGTCAGATATATAAGGTACTACAAAAAGAGGAAATTTTTCAGCTTTTCTAGCAATGGACTTGGACTGAACAACCT GCACCATGGCCTCTTCATAGTGCATGTGTTCTCTTACTATAGCTAGAAGACTTGCTCTTGTCTTTTTTTAAATGTTTATACTTCAATTTTTTTCTTTCTA CAGCCTTTTTATGTTCCAATTAAAGTGACCGATCATAGTGAACAATATACAATATCTTATGATAATATCTTTTTATGTGCTCACTATGTTTCAAGTTGAT GTTTTACATTGTTAATGTTTCCCATATACACTTGGCAGTGCTGTCACTAGGAAAACAATTTGTAACATGCATAAATTATACAAATATGCAGGTATAAATG TA BLAST |
Tissue | pods |
Gene name | LI_gene_166745; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_290948
Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 37.37% of identity |
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Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 37.3% of identity |
Eggnog | - |
Kegg | - |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_020987654.1) |
Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |