Ll_transcript_292537

• Id Trinity: TRINITY_DN49135_c4_g1_i2
• Name Transcript: Ll_transcript_292537
• Sequence: TGAATGATCATGATGATGGTGATGGTGATGATGATGAGATTGTTGAGATTGATAAGTATGAGGAGAATTCGAATAGTGGAGGGAGCAATTTCAATGGAAA TAATCGTAGTGGTGATAATAATGATGGAATTCTGAAGGGGAAGAAGAAAGCAGCGCCGGCTAAGAATCTTCTGGCGGAGAGGCGCCGCCGGAAGAAACTC AATGATAGGTTGTACATGCTTAGGTCCGTTGTGCCAAAGATTAGCAAGATGGACAGGGCTTCAATACTTGGGGATGCAATTGAGTACTTGAGGGATTTAA AACAGAAGGTTAATGATCTTCATAATGAGCTGCAGTCAGTTCCATGTGGCTCATCTGGGACTGTGACACCTTCTTCAAGCTTTCACTCTGTGCCAACCCT TCCTTCTAGGGTCAAGGATGAACTGTGTCTTAGCAACTTGTCAAGCCCTAAAGGTCACTCACCAAAGGTGGAGGTTAGGCTAAGTGAAGAAAGAGCAATC AATATCCATATGTTTTGTGCGCGCAAGCCTGGCCTTTTCCTTTCGACCATGAGGGCTATCGATAGCCTCGGATTGGAAGTTCAGCAGGCAGTTATAAGCT GTTTCAATGGCTTTGCTTTAGATGTGTTCAGAGCTGAGCAATGCAGAGACCAGGATCTTCTCCCTGAGCAGATTAAAGCAGTGTTGTTGCAGGCATCAGG TTTTCATGGAATGGTTTAAGTGAAGGAGTTGAGAAATACTACTACTTTATATTTGGGTTGAGGAATTGGCACCATTATTTTTCTTAGATTATGCTTTTGA TTTTTGAGCAAAGGAAACTTATGTTAATTGTTATTGTAAGACATGGAATAAGTTGTTTTATTTGCTTTTTGTTCCTCCCCCAATTTTGTTGCTTTGTGGG GTGCTTTTGTTTAGGCTTTTGAGAAAATCACTTTTATGATATCAAAAACAAGTTTCTGTTTTTTGTGCGTGATTCATATGTTTGGTTGAGCTTTATTAGA AACGTGTCTGTGAAGGAAAAAACTGAAATTCAACTTTTATGAGAAGCTATATTTTCCAGTTTTTAATTTTTTTTGTAAAATCACCTTTTTATAAATTTTC AGTGTAAAAAAATAATTTTTTAAAGAAAATCAGTGTTATTTGTACCTCTAGTGGTGAGAGGCTGTGTTGAATGTTGATGATTCTGATTTGAATAGTTCAT GAAAATAGTTATTGATATAGTATGGTTCTGAACTCTGAAGATTTTCTTTGTTGTTTTTTAGTGTTTTAATTCATTCTTCACTGTGTAGTGGTTTTTGAGT TGCATCAATCATGTTTGGGCGTGCACCAAGGAAGAGTGATAGCACCAAATATTATGAAGTTCTTGGTGTTTCAAAAAGTGCTAATGAAGATGAAATCAAG AAGGCTTATAAAAAGGCAGCAATGAAGAACCATCCAGATAAGGGTGGAGATCCTGAGAAGTTCAAGGAATTAAGTCAAGCTTATGAAGTGTTAAGTGATC CGGAAAAGAGAGACGTGTATGACCAATATGGTGAAGATGCCCTTAAAGAAGGAATGGGGGGAGGAGGAGGGGGAGGTCATAACCCCTTTGATATATTTGA ATCATTTTTCGGAGCAAGCTTTGGTGGTGGTGGTAGTTCACGAGGTAGAAGACAGATGCAGGGTGAAGATGTGGTTCAATCTTTAAAGGTTTCCTTGGAG GATGTTTACAATGGCACAACAAAGAAACTATCCCTATCTAGAAATGTGTTATGCTCAAAATGTAAAGGGAAAGGTTCCAAAAGTGGAAATTCTGGTAAAT GTTTTGGATGCCAAGGTACAGGTATGAAGATTACGACAAGGCAGATTGGGCTTGGCATGATTCAACAAATGCAACATGTCTGTTCTGACTGCAGAGGATC TGGTGAGATGATTAGCGATAGAGATAGATGCCCTCCGTGCAAGGGTAAGAAGGTTACCCAGGAAAAGAAGGTGCTGGAGGTTCATGTTGAGAAGGGGATG CAGCATGGTCAGAAGATTACATTTGAAGGACAAGCTGATGAAGCTCCTGACACCATCACTGGAGACATTGTTTTTGTCTTACAAGTAAAGGGCCATCCGA GGTTCAAGAGGGACGGCGATGACCTACATATTGAACACAATCTCAGCTTGACTGAAGCGCTCTGTGGCTTCCAGTTTGCTATCACCCATCTTGATGGGAG GCAACTATTGATCAAATCAAACCCCGGGGAAGTCATCAAGCCAGGTCAACACAAAGCAATAAATGATGAGGGAATGCCACACCATAATAGGCCCTTCATG AAGGGTAGCCTTTACATCAAGTTTAATGTTGATTTCCCAGAATCCAGGTTCCTTTCTCCTGACAATTGCCGGTTGTTAGAAACAATACTGCCGCACAAGA CCAAGAAGCAACTGACAGCAATGGAGCTGGACGATTGCGAGGAGACTACTTTGCGTGATGTCAACATGAAGGAGGAAGATATGAGACGAAAGAGGCAACA GCGAGGCCATCCATCATCTAGAATGCACGAGCATGATTATGACGACGACGACGATGATGAGCCATCCGGGCCGCATGTGCAATGTGCTCAACAGTAGTGT CATTTATGTTATAGAAGTTATCCATCAATCTTGAATGTTCTGCATTATTGGTTATTTTTGTTTTTCATATTGCAGTTATAACTTTCTCTTAATATTCCTT TAGGTTTTGTCTGGTGAAGTTATTTAATTTTTAGTAGATTTCTACAGTTGATTTGATATTGGTTGAAATACTTAGCTTATGAAAATTAAGTGCTTTTTGG CACAAGGTTTGTGATGATGATGATAGCATAAAGCATGGTATGTGATTTCAC
• Tissue: pods
• Gene name: LI_gene_166830;
• Additional information: details;

Expression of Ll_transcript_292537

FPKM

• PAB: 0.4
• PNAB: 4.3
• PS1: 4.4
• PS2: 7.8
• PS3: 11.4
• PW1: 2.4
• PW2: 1.6
• PW3: 1.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_292537

• Blastp: Chaperone protein dnaJ A6 from Oryza sativa with 70.56% of identity
• Blastx: Chaperone protein dnaJ A6 from Oryza sativa with 70.56% of identity
• Eggnog: ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins (By similarity)(COG0484)
• Kegg: Link to kegg annotations (4336584)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019413083.1)
• Pfam: DnaJ domain (PF00226.30)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;