Ll_transcript_292541

• Id Trinity: TRINITY_DN49135_c4_g1_i4
• Name Transcript: Ll_transcript_292541
• Sequence: CTCTCTCTCCTTCAACAACTTGGGTACACTTTCTCTCTCTTTAATTTCACTTTCATTCATTCTATTCACTCCCATCTTCTATTTTTTCTTCTATTTCTTC CTCAGATCCCAAAATTCATCTTCAATCTTTTAATTCATAATCACTAATCGGAAAGTTCTGATTTTTATTTTTTTTCATCAAGTTTTCACCTTTTATCTTG TATCAAATTTTGTATCATATTTTCTGGTTTATGTGTTTTTTCTAGATTAAGGGCTTGTCTGTTTAGTCTTTAAAAAAAGTGTTTTTTATAATTAAAGAAA TGCATATACATATACATACATGTTTGGTTGGGCTTTTACTATAAATCAGAAGCTGAAATTCAACTTTTATGAGAAGCTATATTTTCCAGTTTTTAATTTT TTTTGTAAAATCACCTTTTTATAAATTTTCAGTGTAAAAAAATAATTTTTTAAAGAAAATCAGTGTTATTTGTACCTCTAGTGGTGAGAGGCTGTGTTGA ATGTTGATGATTCTGATTTGAATAGTTCATGAAAATAGTTATTGATATAGTATGGTTCTGAACTCTGAAGATTTTCTTTGTTGTTTTTTAGTGTTTTAAT TCATTCTTCACTGTGTAGTGGTTTTTGAGTTGCATCAATCATGTTTGGGCGTGCACCAAGGAAGAGTGATAGCACCAAATATTATGAAGTTCTTGGTGTT TCAAAAAGTGCTAATGAAGATGAAATCAAGAAGGCTTATAAAAAGGCAGCAATGAAGAACCATCCAGATAAGGGTGGAGATCCTGAGAAGTTCAAGGAAT TAAGTCAAGCTTATGAAGTGTTAAGTGATCCGGAAAAGAGAGACGTGTATGACCAATATGGTGAAGATGCCCTTAAAGAAGGAATGGGGGGAGGAGGAGG GGGAGGTCATAACCCCTTTGATATATTTGAATCATTTTTCGGAGCAAGCTTTGGTGGTGGTGGTAGTTCACGAGGTAGAAGACAGATGCAGGGTGAAGAT GTGGTTCAATCTTTAAAGGTTTCCTTGGAGGATGTTTACAATGGCACAACAAAGAAACTATCCCTATCTAGAAATGTGTTATGCTCAAAATGTAAAGGGA AAGGTTCCAAAAGTGGAAATTCTGGTAAATGTTTTGGATGCCAAGGTACAGGTATGAAGATTACGACAAGGCAGATTGGGCTTGGCATGATTCAACAAAT GCAACATGTCTGTTCTGACTGCAGAGGATCTGGTGAGATGATTAGCGATAGAGATAGATGCCCTCCGTGCAAGGGTAAGAAGGTTACCCAGGAAAAGAAG GTGCTGGAGGTTCATGTTGAGAAGGGGATGCAGCATGGTCAGAAGATTACATTTGAAGGACAAGCTGATGAAGCTCCTGACACCATCACTGGAGACATTG TTTTTGTCTTACAAGTAAAGGGCCATCCGAGGTTCAAGAGGGACGGCGATGACCTACATATTGAACACAATCTCAGCTTGACTGAAGCGCTCTGTGGCTT CCAGTTTGCTATCACCCATCTTGATGGGAGGCAACTATTGATCAAATCAAACCCCGGGGAAGTCATCAAGCCAGGTCAACACAAAGCAATAAATGATGAG GGAATGCCACACCATAATAGGCCCTTCATGAAGGGTAGCCTTTACATCAAGTTTAATGTTGATTTCCCAGAATCCAGGTTCCTTTCTCCTGACAATTGCC GGTTGTTAGAAACAATACTGCCGCACAAGACCAAGAAGCAACTGACAGCAATGGAGCTGGACGATTGCGAGGAGACTACTTTGCGTGATGTCAACATGAA GGAGGAAGATATGAGACGAAAGAGGCAACAGCGAGGCCATCCATCATCTAGAATGCACGAGCATGATTATGACGACGACGACGATGATGAGCCATCCGGG CCGCATGTGCAATGTGCTCAACAGTAGTGTCATTTATGTTATAGAAGTTATCCATCAATCTTGAATGTTCTGCATTATTGGTTATTTTTGTTTTTCATAT TGCAGTTATAACTTTCTCTTAATATTCCTTTAGGTTTTGTCTGGTGAAGTTATTTAATTTTTAGTAGATTTCTACAGTTGATTTGATATTGGTTGAAATA CTTAGCTTATGAAAATTAAGTGCTTTTTGGCACAAGGTTTGTGATGATGATGATAGCATAAAGCATGGTATGTGATTTCAC
• Tissue: pods
• Gene name: LI_gene_166830;
• Additional information: details;

Expression of Ll_transcript_292541

FPKM

• PAB: 20.7
• PNAB: 31.5
• PS1: 40.7
• PS2: 36
• PS3: 41.6
• PW1: 53.8
• PW2: 61.7
• PW3: 68.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_292541

• Blastp: Chaperone protein dnaJ A6 from Oryza sativa with 70.56% of identity
• Blastx: Chaperone protein dnaJ A6 from Oryza sativa with 70.56% of identity
• Eggnog: ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins (By similarity)(COG0484)
• Kegg: Link to kegg annotations (4336584)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019413083.1)
• Pfam: DnaJ domain (PF00226.30)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;