Ll_transcript_293258

• Id Trinity: TRINITY_DN49142_c2_g1_i1
• Name Transcript: Ll_transcript_293258
• Sequence: GAAGTAGTCATTTTTCACGGTCAGAAGCAAAAAGAAAGAAAAAAAAACAACACATCCAAAAGCGATTCTATATCTGAATCTCTCTCGGCGTTAGATCAAA TTCACAATTCACTCACATCACATAAAAAATGGCGGACTCGTCGGGAACAACGCTTATGGATCTCATAACGGCGGATCCAACCCCGGCCCCAAACGCTTCA TCGGCGTCGAGTTCCGCCGTATCTCCGGCGATGACGCCACCAGTTGGTCATCCCTCGGCGCTTGGTAAACCCGCAGGTGAGAAGAAATCGAAGAGAGCCG CATTGATGCAGATCCAGAGCGATACCGTTTCTGCTGCCAAAGCTGCTTTAAAGCCAGTTAGGGCTAATATCATGCCTCAAAGGCAGAAGAAAAAGCCGGT TTCATATTCTCAACTCGCAAGAAGTATTCATGAACTAGCCGCCACTTGTGATCAGAAAAAATCCGTGCGGCAATTAGTGCACAATGTATTTCCAAAACTA GCTGTGTACAATTCTGTGGATCCTTCACTGGCTCCCTCCCTTCTCATGCTTAATCAGCAGTGTGAAGATAGAAGTGTCCTAAGATATGTCTATTACTACC TGGCCAGAATATTGTCTGACACTGGTGCCCAAGGTCTGAGCACAGGTGGTGGTATACCCACCCCTAACTGGGATGCTCTAGCTGACATTGATGCAGTTGG AGGTGTTACACGAGCTGATGTTGTGCCACGAATTGTAGAGCAGCTTACTGTAGCAGCCAAAAATTCTGAGTTTGAATTTCATGCACGAAGACTGCAATCT CTGAAGGCACTTACGTCTGCTCCTTCAACCAACTCTGAAATATTGTCCAGATTGTATGAAGTTGTTTTTGGTATACTAGAGAAGGTTGGTGATAACCCAC AAAAGCGAAAGAAAGGCATTTTTGGGGCTAAAGGTGGTGATAGAGATTCTATCATGCGAAGTAATCTACAATATGGTGCCTTGAGTGCTTTGAGAAGACT TCCTCTTGATCCTGGAAATTCAGCATTTCTGCATTATGCTGTAAATGGGATTTCCTTTGTTGATCCAGTTGCTGTGAGGCAAGCACTGGAAATTGTTTCT GAGTTAGCTACAAGGGACCCTTATTCTGTTGCAATGGCCTTAGGAAAGCATGTGGAGACTGGAGGGGCTTTACATGATGTTCTCCATTTGCACGATGTTC TTGCTAGAGTTTCTCTTGCCAGGCTGTGCTGTACAATATCAAGAGCTAGAGCTTTAGATGAGAGACCAGACATTAGATCGCAGTTCAATTCAGTGCTCTA TCAACTTCTGCTGGATCCCAGTGAAAGAGTCTGTTTTGAGGCAATTTTGTGTGTACTTGGAAAATATGATAACAATGAGAGGACCGAGGAGCGTGCTTCT GGATGGTATCGTTTGACCAGGGAGATTCTCAAGTTACCAGATGCGTCGTCAAAGGAAAGTTCCAAAGATAAATCTCAGAAGACAAAACGCCCACAACCTC TTATAAAACTTGTTTTAAGAAGGTTAGAGAGTTCTTTCCGTAGCTTTTCTAGACCTGTTCTCCATGCAGCTGCTAGAGTTGTGCAGGAGATGGGAAAAAG TCGTGCTGCTGCTTTTTCTGTAGGCTTACAGGATGTAGATGAAGGAGCACATGTCAATACATTTGCCGAGGCTGCAGATTTTAATGATTCAGATGAAAAC GCACATCCTGAAAGTATTTTCTTTCTTTCATTTAATGGTGGTGCATGCTTGCATTGTGCATTTTAAACAAGGATTTTTTTGCCATTTTTTTATTATAGAT TATAGATAATTAGATAAAGATATAGATACAACAACCAAGCCTTTCCCCACTATTTGGGGTCAGCTACATGGATCAAACAATGACATTATATTCTATCACA AAATCACATATCATGTCTACAGACAAATCGGTGAATTCTAATTCTTTCTTTATAATTCTGCGTATAGTTTTCACATTCTCTCTCTACCTCTGGCGATTGA CTCATTCTCCATCTGACTGACTCTCCTTAACGGGGCTTCTATAGGTCTTCTTTGCACATGTCAAACCACCTAAGATGCAATTCAATTTTTTTTTTCCTAC AATAGGTGCTACCCTAACTTTCTCTTTGCATCCACTCCTAATCCTATCCTATCAGGATATAGATATAGATAGTTAGAAAGAATCTTGATCATCAAGTATT ATTGTTTGAGGCATATAAAAAAAGTATCATCGTTTGAGATCTAAAACCTATCTTGGTTTTATAGAGTAGGTCCTTGATAATATAATATTTTTCTTACATT CTTTTTTATTATTATATCCATGGTGCATGGATTCCATGCTCTTCCATTCCTGGTTTCTTATGTTGTTACTTTGGTTACTATTCTTTCTGGATTGGATTTG GAGTTGTTTAACAGTGTTATATTTGTTTAGTTATTTACTTCTTTTAGAGTTCATGATATCTGAGAAAATGATAAAAAGTGGAGGAGATGATAATGGAAAG TATATATATATATAGTGAGAGAGAGAGAAGAAAAATGTATTTGGAATTTACAAATTGTAAAATGTCATAAGAGTAACTGAATCTGATCTGCTTCAGGTAC GTTCAGTTGTTCTGGACACTGTAAACACTAACAACTATGAACTGGTGACAGTTTTGTTGACACATCAGCAAACTTGCATGATCTGATGTATTACTACATA TTCTAATAATTCTGATTTCTTTTGTAGAAAGAGAGACATACAGAGAGTGGAAAGTTCCTATATAATGGAAACTTCCTCTCGTGATTATGTTAAATAGCAC CGTAGTTTGTCATTCTTGGAGTTGGGGAATACATGACCTGTGTTATCACACTCACAGCGAAAGTTACTTAAGGTCACATTACTGTTATGATAAACTTTAC CAATTCACATCCTATTTGCTCTAGGTGTTGAAGAAGATATTCGTCATTTTCTCGCTGTTTCATATTAGGAACCTTTGGAGTTTCCACATGGTTTGGCTTC TGACGTACTTGTTTATTTATGAAAGTCAAGGGTGTACTTTTCTTTATGAAAGTAAGATAACCTTCTTGCCCAACTCAACATCAGTTTCTAAGAAATACTT CAGAGCACACATAATTCTAGTGTGGAAATCTGTCTGAGTAAAAGATATGAGAGTTAATTCTAGTGTGGACATCTTTCTAAGTGAAAGATATGAGAGCTTA AGGCAGAATGCAGTGTAGTAGTTACCCCAGAAAATTACATGCTATAGCAAAGAGAGTGGCTGCAATGGAGAAACTTCAAATATTGTTTAACAAACACATA AATGATAATCCTTGTAGTTTTAAAACGTTATACCATCAGGCAGAGCTAAACTCGATCAGACTCCTCTGAATAAATTCAACAATCATGAATCTCATTGACC ATTGGGTTCAATCATATGACACCTGTTCTTTATCCAAAATTGTATGATATTACCTAACTGAATATGTGGGAACAACGCCTCAATTTTTGATCAGAATTGG GTACAACATTTATACACGGGGTTAGACAAATTAATCCCTAAACTTAATGGATCAGGATCAGCTATGTAAGGAAGCATATATATCAACACCCCCTCAAGTT GGAGCATATATATCATATGCATCTAAGTTGTGACATAAACATGTTATCCTAGGACCCCACAAAGGTTTGGTAAGATATGGGCAAGCTGATTTTGGGAGCA AACACATGGTTATTGTGATGTCATGTATGATATTTTCTCTAATGGAATGACAATCAACCTCAATATGCTTTGTTCTCTCATGAAAGACTGGATTGAATGA AAGATACAAAGCTGACTGGTCATCATACATTAGCTTCATGGAATCATCTCTGTAGAATTGTAACTCCTAAAGTAAATGCTTAAGCAGATGAGCTCTTCTG TAGTGTAAAGTCATGGCTCGATACTCAGCTTTTGTGCTTGACTTGGAAACAACATTATGCTTTTTACTCTTCCATGAGATAATATTTTGACCTACTAACA CTTAACTACATGTAGTGGATTGTCTATAACTTGGATCTCCTGCCCAATCTGCATTTGAATACTCAACAATGACATTATGTCCTCAATTTGTATAAACAAT TCCTTTTCCGAATGATCCTTTAATGTTGCCAAGGATTTGAACAAGTGCATGTCAATGACTATCACTAGGGGAACTCACAAAGATTGGGGCTATAAAGAGA GAGGAGGAGCTGACAATCAGAATAAGACCAATGACAACGTTAACCGTGACAAGAAAGGTGGCTTTTGCAGCTCACGGGCTAACGAGGACAACCTGCTTTG GATGTGTGTGGCAGCGTGTGAAGAAAGCGACAACAACAATGATGTAGATGTTGATTGGATGACGACGTCTGAGATGGATGGGAGAGAGATCCCAGGGCAG CAAACTTCGACAGCCACAGGGTCTGCGCTTACAAGAACTGGAACCCTAAAAATGAAACAGTGGGAAGCTCGAAGCACAACTTAGAATCCAAGACAAAAGG ACAAGGATCAACTAGAGTGCTCCGGATACCAACTTAATTGAACACCTGTGAACAATAGCTGGATATTTGATGAGAATTAGGTACGATATTTATACACGGG GTTAGACAAATCTATCCCTAAATGATGGGGAAATAGATGAAGATATCAGCTATAGGATTCAAGTTGGGTGGATGAATTGGAGAAGTGTTTCAAATGGTAT TTATGATAGAAAGGTACCACTGAAGCTTAAAGCAAATTTTTACTGCACGACTATAGTCCTGTGATGTTGTACGGGATTAATGTTGGGTGGTAAAAATCAT TAGGAAATAAACTTAATATAGTAGAGATGAGAATGTTGTGTCGAATGAGCGGACACACTATGTATTCTTGGATTAGGATGAATGCATTAGAGAGAAAGTT GGAGTAACCTATATTGCAGAAAAGGTGAAATTATTCTGAACATTTGGCGTCATTTGATCCTTGTTGTTGGCCCCACATAGTAGGAAAAGATTTAATGGTT GTTGTATCATTCTTTTTTCTTTCTGTCTTAATTTGGGAGAAAGGGAGGAACATGAAGTTCTAATCTAGGTTTAGAGCCCAGCTTTGATACTTGGTAGAAA CAACAAAAGTATGGAAAGAGAGTGGTGAATTCCCATATAATGAGATGCATTGATTTGACTCATGAGTTGGTGATTTATGCTGATGAATTCGGCCGTTTTC ATATCTTGCATGCTTATAATCTGTAATGTTACCTAATGCTTTGTTTGATGCAATGAATAGATGAGTGGATTGTTCTACCTTGTATGCTGTACTATTATCT TAGATTCTTATGTGTACTTAATTGATACTTTGATATAGGCATCCGAAGAACTGCTTCAGTATCGAATGCAAATGCTGGCAGAGATACCATTGCCGGTTTG TTGGCTTCATTGATGGAAGTGGTACGGACAACAGTTGCCTGTGAATGTGTTTATGTGCGAGCCATGGTGATCAAGGCATTGATCTGGATGCAAAGCCCAA TTGACTCATTTGATGAGCTAGAATCTATTATTGCTTCAGAACTTTCTGATCCAGCTTGGCCAGCAGCATTGTTAAATGATGTGCTACTCACTCTACATGC TCGTTTTAAGGCTTCTCCAGATATGGCTGTTACTCTTCTTCAAATTGCAAGAATATTTGCTACTAAAGTTCCCGGAAAAGTTGATGCTGATGTGCTACAA CTGTTGTGGAAGACTTGTCTTGTTGGAGCCGGTCCTGATGGGAAACATAAAGCTTTAGAAGCGGTCACTATTGTTCTTGATCTACCACCTCCACAACCAG GATCAATGCTCGGTATTACTTCAGTGGACAGGGTGTTTGCATCTGACCCAAAGTCTGCTCTTGCATTACAAAAATTAGTCCAAGCAGCAGTATGGTTTCT CGGAGAAAATGCAAACTATGCTGCTTCTGAATATGCCTGGGAATCTGCAACTCCTCCAGGTACTGCATTGATGATGTTAGATGCTGATAAAATGGTAGCT GCTGCTAGTTCTCGTAATCCTACTCTAGCTGGTGCCTTAACTAGGCTCCAGAGGTGTGCATTAGGAGGCAGCTGGGAGATTCGGATTACTGCAGCTCAGG CTCTTACAACAATGGCAATCAGATCTGGGGAGCCTTTCAGGTTACAGATTTATGAGTTTCTTCACACTTTGGCACAAGGTGGTCTTCAGACACAATTCTC AGATATGCATCTTAGTAATGGAGAAGATCAAGGAGCTAGCGGCACAGGCCTTGGAGTTTTACTAAGTCCTATGATAAATGTTCTTGATGAAATGTATAGA GCACAAGATGATTTGATCAAGGAAATACGCATTCATGACAATGCTAAAAAAGAATGGACGGATGATGAGCTGAAGAAACTATATGAAACCCATGAAAGGT TGCTAGACCTTGTTTCATTGTTTTGTTATGTTCCAAGAGCCAAGTATCTACCTTTGGGCCCTACAAGTGCGAAACTCATTGACATCTATCGTTCACGGCA CAATATTAGTGCATCAACCGGTTTGAGTGATCCAGCTGTTGCAACCGGCATATCTGATCTCCTATATGAATCTAAACCAGCACCTGCTAAGCTGGATACA CTCGACGATGACCTAGTAAATGCTTGGGCAGCAAACCTTGGCGATGATGGTTTATGGGGAAACAATGCACCAGCAATGAATAGGGTAAATGAGTTTCTAG CAGGTGATGGAATAGATGCTCCAGAAGTTGATGAAGAGAATATGATCTCTAGGCCATCAGTTAGCTATGATGATATGTGGGCAAAAACACTTTTAGAATC TTCAGAACTAGAGGAAGATGATGCAAGGTCAATGGGATCATCTTCTCCAGATTCAACCGGATCTGTTGAAACTTCAATATCATCCCACTTCGGTGGAATG AGCTACCCGTCACTGTTCAGTTCACGGCCATCCGCTACGGACAAGGCTGCAAGCCGAGGTAGTGGTCCCTCTATTTACGAGGGTCTTGGTTCTCCTATAA GAGAGGAGCCTCCACCATACTCATCCCCTGTCACTCAAAGATATGGATCATTTGAGAACCCTCTCGCAGGGAATGGATCTCAAAGTTTTGAATCTCAAGA TGACGAACGAGTTTCATCTGGTAACCCACAATTTGGATCTGCGCTTTATGACTTCACAGCAGGAGGAGACGATGAATTGAGTCTAACGGCCGGAGAAGAA GTTGAGATTGAGTATGAAGTAGATGGCTGGTTTTATGTTAAGAAGAAACGTCCCGGCAGGGATGGCAAGATGGCTGGATTGGTCCCTGTTTTATATGTTA ATCAGTCTTAATCTTTCATGAAACAAGTAAATGTCTGGTAATATCCCTGTCGTGATGCAAAGAGATTTTCCTTTTTACTCATTATATCTTGTGCGTTGCT CTGCTTTTTGTCAAGTTTGTGTATTTTAGAAGTGTCATTTTCCATAGCAATTGCTTGTGAGTATAGTAATTCATCTACTTATTTTGTTTACTAATCATGA TTTTTGGATGTACTGTCTATTCGAAATACTTGAATGAGTATGCATGTATATGGAGTTCTATATATCAAGTTAAAGGTTCAGATTTTCCATGTCAAAA
• Tissue: pods
• Gene name: LI_gene_166889;
• Additional information: details;

Expression of Ll_transcript_293258

FPKM

• PAB: 0.1
• PNAB: 0.6
• PS1: 0.3
• PS2: 0.6
• PS3: 0
• PW1: 0.3
• PW2: 0.5
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_293258

• Blastp: -
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 33.73% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020239528.1)
• Pfam: Variant SH3 domain (PF14604.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;