| Id Trinity | TRINITY_DN49145_c3_g2_i8 |
|---|---|
| Name Transcript | Ll_transcript_293370 |
| Sequence | TTCTCATTCTTTCATGCATTGTTTTAATGCTAATTATTATTACCATTATATTTTTGGTGAAAATTCCAATTATTATTTCCATGTGGTACCAACTAACCTC GGTATAAAGTACTGGAGAGTAAAAAACACCGCTTCAGACAAAACATGAAAAACTGCAAATCACACAGCGAAAAGTCACATCCAAGCATCGTTTGTTGTTG TTGTTGTTGAAGCTATCTACGTTATAGAGTTTTCACAAAACAGAGACAACCCAAGCATGTATCTCACACTATACTAGTGCCAAATCTTATATTTCAACCA CAAAAGTCTAAAACTTTGTTTCCAATTCAGAGACCCATTTGCCGGAAGATACCATTTTCCGGCGAGGTTAGTGAGTTTCCGGCTATCAATGGCGGCGGTG GACAATGAAAAATCTGGGTCTGATGGCAAAGTTCGGAGCTTTTGCAATTTGTCATTTTGGCAAACAACTCATGCTTCTTCTTCTTCATCATCGTCTTTTA CTTCTTCAACATATTCTTCTATGCATAGTAGTGTTCATCAGCAAAGCCAGATTCTTCAGTCTCTTGATAGATCCACTCATCAACCAAAAACTACGGTTTC CTCCGTGGCTAAATCTCTTCTTCCTACAAGGAGAAGACTTCGTCTCGATCCTCCCAACAAGCTCTACTTTCCTTATGAACCTGGTAAGCAAGTTAGGAGC GCCATCACAATTAAAAACACTTGCAAGTCTCATGTAGCTTTCAAGGTGCGGTGTCTATATCTACTATTCCTTTTTTTTCTAATTAATCTATGTTTCATTT AGAGTATTGACATATAACATTGGGAATTTTTATTAAAATACTTCCAAGATGTTGATAAATTTTGCTATAGTAACTAGAGCATGATAGGTCGTGTAATATA TTGAACAAGACACCAAGAATGTGTTAATCTAGTGGTGTAAGGCCCTACTAGATCCCCAAGGTCGAGAGTTTGATTCTTGGGAGTGACACTTGTTGGAGGG GCAACTACAAACCCGGAAAGAGATTAGTTCTTTGCCCAAAAAGGTAAAGGATACCCTTGATAGTACCAAAAAAAATGCTGAACAAGGCCAAATCTTCATA TTTGCATTTCACCACGTATTTGATAGGATTATGAATAATTCAGCTGTTTATTGAAATATCAATTTTACATAGCTTGCTATATTTATCCACTCTTAATGTT ACTGCTGATGGTGATGTTTTGTTTAGTTTCAAACAACTGCTCCCAAGAGTTGTTATATGCGCCCACCAGGTGGTGTTCTTGCACCTAGTGAAAGTATAAT TGCAACCGTGTTTAAGTTTGTGGAGCCGCCAGAAAACAACGAGAAACCAATTGAGCAGAAAAGCAGGGTTAAGTTTAAAATCATGAGCTTAAAAGTGAAA GGTGAAATGGATTATGTACCAGAACTGGTAATGTATTATTGTTACCTTGGCCTCAATGTGAATTGTTTACTCAATTATATCATAATCTTTCCAATGCTGA ATAAATCTTTCAACAATTGACTTTGTTAATGTGCTATAAGTGAATCCTTAAGATTATGGAGTTTCACTGTTATGTAAAACACCTTATTTCTAGTGTTACG AATTTCAGTATAGGTTTGATGATGTTGATAAAATCAGTTTTCATAATCCATCTATAGCATATGGCATGTACAACTTAAAATTCTTAGCTTTATCCATGTA AGGATTAACAACCTAAGTCTATAACATGTCAAACATATTAGTTTCAACATTTTGGACGAAGTGATTTGGTTTCTGTTTAAAGAATACAAAGAACATGCAT TGGTCTAAGTACAGCAATTCTTCCATATTGCTTTCAAATACTAATCACAGTTGTGCCATATGATCCCTCACAGTTTGATGAGCAAAGGGATCAAGTATCG GTGGAGCAAATTCTGCGGGTGGTTTTCCTGGACCCTGAACACTCTAACCCTGCCATGGATAAGCTTAAACGGCAGTTGGCTGAGGCTGAGGCTGCACTGG AAGCAAGAAAGAAGCCCCCGGAGGAGACAGGTCCTCGAATAGCTGGGGAAGGACTTGTTATAGATGAATGGAAAGAAAGAAGAGAAAGATACCTGGCAAA GCAACAGGTTGAAGGGGTTCCATCAATGTAAAGTTTTTTGGTGTCTTGTTCTTAATGTTCTCCAGTTTCATGTTGAGAAAATGAATTCCTTGATCACCAA TCTGGCAGATGTGGTCGAGTGACCCAGCAAAGTACTGTAATGAGATATTGTGAAATATTTCTTTGTTCTATTTCAGTAGCATATTTGAGGTGTTATATGA TATTGAATTAATACTGTGGCTGGTGGTATTTAATTGTACTTTTGTATTAGCTCCTATAACTTGTTCATAGTTTTAGCTTGTTTGAAGCGAAATTGATAGT AACAGAACTGGTATTTTACCTTCATGTAACTTATAGTTGGGGTTGAATTTGCCTAATATTTTATGGGAGTGGCTAGCCCCTTTGTTTTCTTGTTCACCTT TCTCTTCATCTTACAGTTATGCAGTAGTAAAATGTTTCCATGAACAAGAAAGATCCTTGATTAGTTACAAAAAGAAAAGTGTGATCAAGTTATTAGACTC TCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_166918; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_293370
| Blastp | Vesicle-associated protein 4-3 from Arabidopsis with 61.73% of identity |
|---|---|
| Blastx | Vesicle-associated protein 4-2 from Arabidopsis with 86.57% of identity |
| Eggnog | Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod (By similarity)(COG5066) |
| Kegg | Link to kegg annotations (AT4G05060) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448982.1) |
| Pfam | MSP (Major sperm protein) domain (PF00635.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |