Ll_transcript_293224

• Id Trinity: TRINITY_DN49146_c2_g4_i12
• Name Transcript: Ll_transcript_293224
• Sequence: AAAAGACCAAGGGTTTCTATACATTTCTATCTAATGTGAACCATAAGTATAGACAGTGGATAAACAAAAGTAGTTGTTGAATTCATTACTAATCTGTACA ATATTCCAACTTTCAAGATTTACTAACATTTCCCTAAAAAAGGGAAGAAGATTAGCTAATGGTCTAAACTAAACTTTCAGACAGGAACCCTCACCAAAGG AAAACCGGTTGTCTCTGCTATAGGCTCTATTCATTATGAAGAGTCGGAAATTCTTCAGATTGCAGCTGCAGTGGAGAAAACAGCATCTCATCCAATAGCA AAGGCTATTGTTAATAAAGCTGAATCATTAGAGTTGATTCTTCCACTTACAAGAGGACAGTTGGTTGAACCAGGTTTTGGAACCATGGCAGAAGTAGATG GGCGTTTGGTTGCGGTTGGATCTTTACAATGGGTCAATGAACGCTTCCAGACAAGAGTGGACCCATCTGGTTTGATGAATTTGGAACATAGTTTGATGAA TCATTCTTCAAATATGACATCTTCAAACTATTCGAAAACTGTTGTTTATGTTGGACGTGAAGGAGAAGGCATCATTGGTGCTATTGCCATATCTGACATT GTGCGCGAAGATGCGGAATCTACTGTAACAAGGCTTAAGCAGAAGGGGATTAAAATGATCCTCTTATCCGGAGACAGGGAAGAAGCAGTAGCAACTATAG CAGAGACGGTTGGAATTGAAAGTGATTTTGTCAAAGCTTCACTGTCTCCACAGCAGAAATCTAAATTCATTTCATCTCTGAAAGCTGCTGGACATCGTGT TGCAATGGTAGGTGATGGGATAAATGACGCACCCTCTTTGGCTGTAGCTGATGTTGGGATTGCTCTGCAGAATGAAGCTCAAGAGAATGCTGCCTCGGAT GCAGCATCCATTATACTTCTTGGGAACAAAGTTTCGCAAGTATGTCATTTCTGAATTCCTTAATTTATTAATTTGATTTTCTGCATGTCGAGATTTTACT TTTATGCTTTCACCCTGCATCATTTCATGTATTATTCTTGAGTGATCCTTTTTCCTCCTGCATCTCGGTAAAACACTAGTTGTTTTTTTATTTTTTGACA TTTTTTTCCAAGTGAGTAGAAGGACTTGTAGGATAGTTCATAGGAGAATAAACGGTATCTTGTTCTTTTTACAGTGAGCTTTGCTCTCTGCATACCCAAT TCTCTTATGATGGAATTGACCCTCAAAAAATTGAAATTGCTGCTCAAGAGTATGGAAATGTGTTCTAATAAGTATATTCTGTTAGTACTAGCATATTTGG TACAAAATCCACTTTATTGTTCTCCGGTGTCTTCCTTTACTGACTTTTTATTTGACAGATTGTTGATGCACTAGACCTTGCACAGACAACTATGGCAAAA GTGTACCAAAATTTGTCTTGGGCAGTGGCCTACAATGTTATTGCCATTCCCATTGCTGCTGGTGTATTACTTCCTCATTATGATTTTGCTATGACACCTT CACTTTCAGGTGAGCAACATTATATCACTCGTTTCTTTTTCAATTTTCTTAGTAGCTAAGCAAATAAGGGTCTATTTTTATCTTGTAATTGCTGTCACTC TCATACAGTTTCTGCACCTACCATATTTTTTTCTAAAGACTGGTTCTTTTCTGTTTATGCCCTTGATTTTAATCACAGGAGGAATGATGGCTCTGAGCTC CATCTTTGTGGTGAGCAACTCACTGCTTCTACAACTTCATGGGTCTAAGACTTCCACAAAGGGCTCACTCTAGTCACATGTAATAAACATATCTTCTATC CATTACAGCATGGTACAGTGTAAGTTTTGTTAATTAACGGGGGTGGTGATTCTTTCTAATCAAGACAATAAGAGTATGATTTAGGCATTCATCAAATAAG CAGAATTAAGAATCACAAGCAGCAAGCTCCTATTTTGTTGTTATTGTAATTAAAATTTGTGTATAGTTGTGACCAATATCTTGAGTAAGTCTGGTTTTGA TGCCATGTTAGAATAGCTCAAGTCAAACTTAATTCAACATTGTTTGTCATATTTTCAATTAGTGTGCAACTATCTTTGTACTATATGAATGCATCAATAA AAGAAAGTTCCAACCATAGGCAGAGGGGGAAGAAATTAGTGAT
• Tissue: pods
• Gene name: LI_gene_166938;
• Additional information: details;

Expression of Ll_transcript_293224

FPKM

• PAB: 0.6
• PNAB: 0.3
• PS1: 0.3
• PS2: 0
• PS3: 0.1
• PW1: 0.5
• PW2: 0.2
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_293224

• Blastp: Copper-transporting ATPase PAA2, chloroplastic from Arabidopsis with 67.02% of identity
• Blastx: Copper-transporting ATPase PAA2, chloroplastic from Arabidopsis with 68.48% of identity
• Eggnog: p-type ATPase(COG2217)
• Kegg: Link to kegg annotations (AT5G21930)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019437831.1)
• Pfam: haloacid dehalogenase-like hydrolase (PF00702.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;