| Id Trinity | TRINITY_DN49148_c1_g1_i18 |
|---|---|
| Name Transcript | Ll_transcript_291545 |
| Sequence | ATTATGATGTCGTTCGATTCATGTAGCCGACCCCACCTAGTGGATTAAGGCTTGGTTATTGTTGTTTTTATCATTTAAGTTTCTTTGGACCAGTTTCTTA CCATTGGTCTTGCCTGCAAACCAATTTATTGGTTGCTTTTTTTCTGTTACTGGTCAGGACTCGGGAGTTTATTTTATTTGGCATGATCTCATCTGCATTT TGTTTTCTGTTATCCACATATCACTTATATTGTGAATTACAGGCTTACAGCATTAGTTTATCCATAACTCAGTTCAAGTTTGTCAAAGAATATCAAATAC TGCTTTAAGATTTGGTCACTTTCTGTCTTTCTCTTCTTCTTAACAAGCAATGTTACTGTAGCCTTAACATTTTTAGCTCATTATTTCTTGACTCAACTGC GGTCAGATTCAGATTTGAGTTAGGATAGAGTTGCTTTTCTAATCTACTTACTTCACACCTGGATTGCTGCCCCCACGGAATTTTTATTTGCAATTTCAGG ATTTTGTTCTTCTAGTCAGGTTAAAGAGAAAAAAGTAAACAAAAAACCGGGATTTATTTTTTTGGGGGTACACTTCATCCGTAATAGACCACGCCAGGTT CGATTAGTATTGATTATAGCTTAATTGAGAGCTTGAAGATGTTTTACATCTTAAATGATTGGAAAAGTATGTTCACAGGGCTGACATATATAGCATACTT ATCAGGTATCAGCTAGCATCTAGTTTTGTAATCCACAAAATGGTCTCATTAAATTGCAGGCAAAGGAGTTTCAAAATTCTGTGCCAAGTATCTACACCGG CAAGTGCTTAAGCATGAAGCTTACGAAGTGGGAGATCTTGGCACATCTTTACAGAAATCTTTCCTCAGAATGGATGAGATGATGCGTGGACAAAGAGGGT GGAGGGAATTAGCAGTCTTGGGAGATAGTATAGAAAAGTTGTCTGGCATACTAGAGAGCTTTATATGGTCTCCCAAGGGTGGTGAAGCCAATGACCATGT TGATGATTGGGCTTTTGAGGAGGGACCCCATTCTAATTTTAGTGGACCAAACTGTGGAAGCACAGCTTGTGTGGCTGTCATTCGAGGAAATAAACTTGTT GTTGCAAATGCTGGTGATTCTAGATGTGTATTGTCAAGGAAGGGCCAGGCACGTAATTTGTCAAAAGATCACAAGCCTAACCTTGTGGCTGAGAAAGACA GGATTCTAAAAGCTGGTGGATTCATCCATGTTGGACGGGTCAATGGAAGTTTAAACTTGGCTAGGGCAATTGGTAATAGAAATTCCTTTGTTATGATTTC TTAACGCAAAGCAAAATGCGAGAGTTCATTAGTCTGAAAGTGTAATTAGTGTTGTCTTGAGATTAAATTTTTTTGTCAGCGTCCCAGGTGGCTTTATTAT AAAATTTGTATTACAGGAGACATGGAATTCAAACAGAACAAGTTTCTGCCTGTTGAAAAGCAGATTGTGACTGCAGATCCAGACATAACCTCAGTAAGTA TTGCTTAGTGGTCGGTCAGTGTATTATATATGTTGTAAACAAGTTCATATTTATCAGAAAAAAATTTCTTTTTGGTGCCTCTTGTTTGTTCATTCATTAT AAGCTGATAAATTAATTAATTAGTTGTAAAAAATGACAGAAAATACTTCAGATCAGTCAAACCTTTATGATTTTCTTCTCTATTTTTTATTTAATTTATA TTTTTAAATTTATGTATTCTTTGTAACAGATTGAGCTTTGCGATGATGACGAGTTTCTTGTACTAGCTTGTGATGGGATATGGTAGCTTTCTTTGTTACT TTTATTTTCTTCTAGAAATATTGTTGGTGTTTACAAATCTGTATAGATGGCAAGATTCCTTTTTTTATATTTTGTAGTTCTTGCTCTATTTAATTCTTTA CTATTATATAACCTGTTTGAGGTTGAGTCTCGACGCAACAATAAGATTGCTTGTTGTGTGACCTAGAGGTCAAGGGTTCAAATCCTGAAAACAGACTTTT CACTACGAGGTTCAAATCCAAACCCTACTAGGTGGGAGCCTCGTGTAATGGGTCGCCCTTTTTTATTATATAACTTGGTTATTTGTGTAGGGATTGCATG TCAAGTCAACAGCTTGTGGATTTTATACATAGACAGTTAAAAACAGAGAATAAACTTTCTGCGGTCTGTGAGAAAGTATTTGATAGTTGCTTGGCACCAG CAGTTGGTGGTGAGGGGTGTGATAACATGACCATGATTTTGATTCAGTTCAAGGATCCTTCAAATCCCAGCGCTCCCGTCACAAACCAGCCTCAGTCATC CACCGAATCGTCCAAAGCTGATACGGGTGAAGAGAAAGCAGAATAAAACTGAGAAAGAAATCGGACAACATCTGAAGCATCGATGGGCAGGGTTCATGGA TACTGTTCTGTATCCAGATTTCAGGATGTTGATTAGGGGATTGTAAATTTGTGAATGAACATGATATTGACTTTGTACATAAGTGTGTTTAGCATATGAA AGGAAAACAATGGTTCAACAAGCATACTAGCACACAGTTACATGGATGGGTAAAATCACTGTGCAAACTTACCATTGCCAATGGTAGCTACCTGAAATGT TTTCTGGAATATGGGGTCATGTTCAGTACCCATAATCTGTACAAGTTTGGTGATGATTCAGTTTTATGTATGGAATTTACAGGTAACTCTTTTTCTATAG ACCCCTATAGTTGATTGATTGATGCACTTATAATTACATTATTGTTAATTTTCTATATGGCAGATGATACTGGTTAGTTTCTTGTCTGGTTCTATAGATG TTAGTTTATATGCTAATAACATTTTGAAAATGAGGAAAGGATCTTGATAGAATCTCAAGTGACTTCATTATTATTACTGTTGTGG BLAST |
| Tissue | pods |
| Gene name | LI_gene_166947; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_291545
| Blastp | Probable protein phosphatase 2C 58 from Oryza sativa with 71.32% of identity |
|---|---|
| Blastx | Probable protein phosphatase 2C 60 from Arabidopsis with 60.48% of identity |
| Eggnog | Phosphatase(COG0631) |
| Kegg | Link to kegg annotations (4341693) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019456350.1) |
| Pfam | Protein phosphatase 2C (PF00481.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |