| Id Trinity | TRINITY_DN49151_c5_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_292737 |
| Sequence | GTTTCCTTCATTCCTTGTATCTTGATGGAATTGATGGTAAAACTTCATTAGAAGGAGTCTTTAGGTGTTTAATCATTTAATTAACCTAGCAACTTCTTTA TGCAATATAGCAGTGTCCTCTTGAAATTAAATGGATGCTCTACTCTAATCTTCTCCCAGTCTTCATGTTCTATTGAGCTAAAACATCCAAATTTGTAAGT AAAGTCTAGCTTAACAATTGCAGGCACTTTGGATAATTTTGTAGCAGATTCTGCATCTATTGCTTCTAGCATCAAATATCATGCTGAGTTCAAGACATCC TTTTCTCCAGAGAAGTTTGAGCTTGGTAAGGCATACCTTGCAACTGCACAAAGTGTCTGTGATTCACTCATCATAAATTGGAATGCAACATATGACTATT ATGAGAAGATTAATGTTAAGCAAGCTTATTATATGTCTATGGAGTATCTACAGGGCAGGGCATTGCTAAATGCAATTGGTAATTTACAACTCTCGGGTCC TTATGCTGAGGCTCTCAGAAAGCTGGGTCAAAATTTAGAAGATGTGGCTAATCAGGAACCAGATGCTGCCCTTGGGAATGGTGGATTAGGTAGACTTGCT TCTTGTTTTTTGGACTCATTGGCAACACTTAATTACCCTGCATGGGGATATGGACTTAGATACAAGTATGGTTTATTCAAACAGCTTATAACAAAGGATG GTCAGGAGGAAGAAGCTGAAAGCTGGCTTGAGGTATTATTCTGCCGTCCCAGATCTTGTCGCATACATTGTACGGGACAGGATCTGGGACAGCGTATCTC TATTCTTATTTATATGCATCAATCATTAGTTAATGGCTTGAAGCTGTTTTTCATATTAGGGTAGGTTTGAATGGTTCTTTAATTCTTTTATTGCTATCTA TGCGTGCTTTGCAAGGTTATTCCTATAAGCAAGTTACAAGTTTTTTTACTGATTGAAGTGACTTTACAGATGGGAAATCCTTGGGAAATTCAGAGAAATG ATGTATCTTATCCAGTTAAGTTCTATGGAGAAGTTATTTCAGGGCCAAATGGAACTAAACAGTGGATTGGAGGAGAAAATATATCAGCTGTTGCTTATGA TGTTCCAATACCTGGATACAAAACTAGAACAACTATTAACCTGAGATTGTGGTCCATTAAAGTTTCACCAGCACAATTTGATTTACAAGCTTTCAATACG GGAGATCATGCCAAAGCATATGCTGCCATGAACAATGCAGAGAAAGTATTTCGATACTCCTTTATAAACTCTATACCCAAATTTGACCCAAAAAATTACT TCTCCTGATTTAGTCTCGGAGAAATGAAAAATCTCAATTTGTTAAAATGTCGACCAAATTATTCATTTTCAGGACAAATTTTAAGAACATATCAAATAGG GGTCACATTTTTTATCGGTTGTGGATATTAAGTCCTTCTCTTTTTAACATTTAGAATGTTGTAATTATGATACTTTTGCTCCCAAATTTAGTGTCCCCTG TAAACTTTTAAGGTTTGTTTGGGACATTTTTGTAGGAGAAGGCTTTGGAGCCGTCTCAGCACTATATTTCATGCCTCCTTCCTCCTTCAAAACTCAAATC GCAAACAAAGCTAAAGGGGTATAATGAAAGGTTATATATGCCTAGTTGCCCACTAATAAAACGAGAAGTAAATTACATAGATATGAAGAATAGATAGCTT TTACTCTTCTTGTTTCAAATTGTAATGGAGCCTTCTTCTCATCCACCAATAATCAGAAACGTTTATTTGCATATAAAATTTAAGTTAATTGGACAACCTG CATAAATCACTAGTGATTCTCATTTTTTTATGTTACATTGCAAACAGATTTGCTATGTGTTGTACCCTGGAGATGAATCCTTAGAAGGAAAGATACTGCG ATTGAAGCAACAATATACATTATGCTCTGCATCTCTCCAGGATATTTTTGCACGCTTTGAAAAGAGATCAGGAAATACAGTAAACTGGGACACTTTTCCA GAAAAAGTGGTGGTTCAAATGAATGATACTCACCCAACACTCTGCATTCCTGAACTGATTAGGATATTGATAGATGGAAAGGGTTTAAGCTGGGAAAAAG CTTGGGATATTACCAAAAGAACGGTTGCTTACACAAACCACACAGTTCTGCCGGAAGCGCTAGAGAAATGGAGCTTGACACTTCTGCAGGATTTGCTTCC TCGACATGTGGAGATAATAAGAAGAATAGATGAAGAGTTCATACTTGAAATTATTTCCAAGTATGGGACACATGATCTTGACTTGATACAACAAAAGCTT AGAAAGATGAGAATACTAGAAAATATTGAGTTACCCAACTCAGTGATAGAGCTGATTAATAATTTAAAGAAGGCTCCTGCCTCTGAGGATGTTAAGGAAA TTGGTCTTAATGATAATGATATAAAGGCAACAGAAGAGAAAGAAGATGATGAAGTCGGGGAAGAGGAACAACAACAAGAAGAAGAAGAAGATAACAATTC TACTAGGGAGGATACTGATAAGAAAACGGAGTGGACATTCAAAGTTGATCCGAATTTGCCAAGGATGGTTCGCATGGCTAATCTTTGTGTTGTTGGTGGA CTTTCTGTGAATGGAGTAGCTGAGATTCATAGTGAGATTGTGAAAGATGAAGTTTTCAATGAATTTTACAAGTTGTGGCCAGAGAAATTCCAGAATAAAA CAAATGGGGTGACCCCTAGAAGATGGATCCGTTTTTGTAATCCTGATCTTAGTAACATCATAACCAAGTGGATTGGAACAGATGATTGGGTAACTGATCT TCAGAAGTTGGCTGTACTTCGCAAGTTTGCAGATAATGAGGATCTACAATTGGAGTGGACAGCATCCAAAAAAAGAAACAAGATTAAGGTTGCATCATTT CTCAAAGAGAAAACTGGTTATGTTGTCAGTCCAAATGCAATGTTTGATGTACAGGTGAAGCGAATTCATGAATATAAGCGGCAATTACTGAATATTTTGG GAATTGTTTATCGCTACAAAAAGATGAAAGAATTGAGTGCCGAAGAAAGAAATCAAAAGTTTGTTCCTCGGGTTTGTATTTTCGGAGGAAAAGCATTTGC AACATATGTTCAAGCCAAGAGGATTGTAAAATTCATCGCAGATGTAGGAGCTACAGTCAATCATGATCCAGAAATTGGAGATCTTTTGAAGGTTGTATTT GTCCCTGATTACAATGTCAGTGTTGCTGAAGTGCTGATTCCTGGCAGTGAGTTGTCCCAGCACATTAGCACTGCTGGAATGGAGGCTAGTGGAACAAGCA ACATGAAATTTGCAATGAATGGGTGTGTACTTATAGGAACTCTTGATGGTGCTAATGTTGAAATAAGAGAAGAGGTTGGAGAAGATAACTTCTTTCTTTT TGGTGCACGAGCTAACGAGATCGCTGGGCTGCGGAAAGAAAGAGCTGAGGGAAAGTTTGTATCAGACCCAAGGTTTGAAGAAGTAAAGACATATGTTAGA AGTGGTGTTTTTGGCCCCTACAACTATGAAGAATTGATGGGATCATTGGAAGGAAATGAAGGGTATGGTCGTGCCGATTATTTCCTTGTTGGCAAGGACT TTCCTAACTACTTGGAGTCCCAAGAAGCAGTTGATCAGGCATATCGTGATCAAAAGAGATGGACAAGAATGTCAATTTTGAACACAGCTGGTTCATACAA ATTCAGTAGTGACCGGACTATTCATGAATATGCTAGAGACATATGGAAAATTGAACCTGTTGTCTTACCTTGAAAAGTTACATGTTGAGTTTTTTAGCAT ATTCAGCTTGTTCCTTATCTCAGAATTAAGTTCAGAAGGGCTTGAAAACTGAAGAAGAGGTTAAGTTCACTTGAATAGCCATGCAAAGAATATGTGAGCT TTTGTTGCCCCGGGAGAGTAAAGCTTATCTTCATAGCATTTTGTAATACATTCCCATTCTAAACTTTTCAATCATATTGAAATTAAATTAAATTTCAATC TTCAATTTAAGACACATGGAATGATATATTTTAACTCTGTGGAACAATAGATTTTCCCCAAGCATAGAAATGCTCATAAGGATTTAGGGAGTCATGCAGG ATCAAGTAGAATTGTTTATCACTTTTCAACCAATATTTTTCTCAGAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_166990; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_292737
| Blastp | Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic from Solanum with 74.21% of identity |
|---|---|
| Blastx | Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic from Solanum with 76.19% of identity |
| Eggnog | Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (By similarity)(COG0058) |
| Kegg | Link to kegg annotations (102603391) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019445910.1) |
| Pfam | Carbohydrate phosphorylase (PF00343.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |