| Id Trinity | TRINITY_DN49151_c5_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_292772 |
| Sequence | GATAATACCAAATGCAAGAAAGAATAAAAAGGATAAGAAGATAAAGACAGACTCCATCTTCTATCACTGACTTCTCCCCTTTTTCCTCACAGGTCACAAC ATTATTTCTACACATACTGAATTAGAGTATTGCAGCAATGGCTGCTCTACCGTTCTCATCAATCTCTAGGCATGCCAACTCTCCTTTACATTACAATTCC AAGTCAAGCATCACAGGTTTCAATCAAAGAAACAGTATTTGCTGGCTGTTTTTCATCAGAAAATCAAACTCCACAAGGGCACTAAGAAAGCTGGTTGTTA AGAATGTTGCCAGTGATAAAAGGCAGGAACTGAATGAACCATTGTCTGAACAAGGCACTTTGGATAATTTTGTAGCAGATTCTGCATCTATTGCTTCTAG CATCAAATATCATGCTGAGTTCAAGACATCCTTTTCTCCAGAGAAGTTTGAGCTTGGTAAGGCATACCTTGCAACTGCACAAAGTGTCTGTGATTCACTC ATCATAAATTGGAATGCAACATATGACTATTATGAGAAGATTAATGTTAAGCAAGCTTATTATATGTCTATGGAGTATCTACAGGGCAGGGCATTGCTAA ATGCAATTGGTAATTTACAACTCTCGGGTCCTTATGCTGAGGCTCTCAGAAAGCTGGGTCAAAATTTAGAAGATGTGGCTAATCAGGAACCAGATGCTGC CCTTGGGAATGGTGGATTAGGTAGACTTGCTTCTTGTTTTTTGGACTCATTGGCAACACTTAATTACCCTGCATGGGGATATGGACTTAGATACAAGTAT GGTTTATTCAAACAGCTTATAACAAAGGATGGTCAGGAGGAAGAAGCTGAAAGCTGGCTTGAGGTATTATTCTGCCGTCCCAGATCTTGTCGCATACATT GTACGGGACAGGATCTGGGACAGCGTATCTCTATTCTTATTTATATGCATCAATCATTAGTTAATGGCTTGAAGCTGTTTTTCATATTAGGGTAGGTTTG AATGGTTCTTTAATTCTTTTATTGCTATCTATGCGTGCTTTGCAAGGTTATTCCTATAAGCAAGTTACAAGTTTTTTTACTGATTGAAGTGACTTTACAG ATGGGAAATCCTTGGGAAATTCAGAGAAATGATGTATCTTATCCAGTTAAGTTCTATGGAGAAGTTATTTCAGGGCCAAATGGAACTAAACAGTGGATTG GAGGAGAAAATATATCAGCTGTTGCTTATGATGTTCCAATACCTGGATACAAAACTAGAACAACTATTAACCTGAGATTGTGGTCCATTAAAGTTTCACC AGCACAATTTGATTTACAAGCTTTCAATACGGGAGATCATGCCAAAGCATATGCTGCCATGAACAATGCAGAGAAAGTATTTCGATACTCCTTTATAAAC TCTATACCCAAATTTGACCCAAAAAATTACTTCTCCTGATTTAGTCTCGGAGAAATGAAAAATCTCAATTTGTTAAAATGTCGACCAAATTATTCATTTT CAGGACAAATTTTAAGAACATATCAAATAGGGGTCACATTTTTTATCGGTTGTGGATATTAAGTCCTTCTCTTTTTAACATTTAGAATGTTGTAATTATG ATACTTTTGCTCCCAAATTTAGTGTCCCCTGTAAACTTTTAAGGTTTGTTTGGGACATTTTTGTAGGAGAAGGCTTTGGAGCCGTCTCAGCACTATATTT CATGCCTCCTTCCTCCTTCAAAACTCAAATCGCAAACAAAGCTAAAGGGGTATAATGAAAGGTTATATATGCCTAGTTGCCCACTAATAAAACGAGAAGT AAATTACATAGATATGAAGAATAGATAGCTTTTACTCTTCTTGTTTCAAATTGTAATGGAGCCTTCTTCTCATCCACCAATAATCAGAAACGTTTATTTG CATATAAAATTTAAGTTAATTGGACAACCTGCATAAATCACTAGTGATTCTCATTTTTTTATGTTACATTGCAAACAGATTTGCTATGTGTTGTACCCTG GAGATGAATCCTTAGAAGGAAAGATACTGCGATTGAAGCAACAATATACATTATGCTCTGCATCTCTCCAGGATATTTTTGCACGCTTTGAAAAGAGATC AGGAAATACAGTAAACTGGGACACTTTTCCAGAAAAAGTGGTGGTTCAAATGAATGATACTCACCCAACACTCTGCATTCCTGAACTGATTAGGATATTG ATAGATGGAAAGGGTTTAAGCTGGGAAAAAGCTTGGGATATTACCAAAAGAACGGTTGCTTACACAAACCACACAGTTCTGCCGGAAGCGCTAGAGAAAT GGAGCTTGACACTTCTGCAGGATTTGCTTCCTCGACATGTGGAGATAATAAGAAGAATAGATGAAGAGTTCATACTTGAAATTATTTCCAAGTATGGGAC ACATGATCTTGACTTGATACAACAAAAGCTTAGAAAGATGAGAATACTAGAAAATATTGAGTTACCCAACTCAGTGATAGAGCTGATTAATAATTTAAAG AAGGCTCCTGCCTCTGAGGATGTTAAGGAAATTGGTCTTAATGATAATGATATAAAGGCAACAGAAGAGAAAGAAGATGATGAAGTCGGGGAAGAGGAAC AACAACAAGAAGAAGAAGAAGATAACAATTCTACTAGGGAGGATACTGATAAGAAAACGGAGTGGACATTCAAAGTTGATCCGAATTTGCCAAGGATGGT TCGCATGGCTAATCTTTGTGTTGTTGGTGGACTTTCTGTGAATGGAGTAGCTGAGATTCATAGTGAGATTGTGAAAGATGAAGTTTTCAATGAATTTTAC AAGGTGAGAGTAGCAGCCAAATCTGTCTATTTTCATGAACAATTGCTGATATGGATCCCTGTATGTGAATCCAGAAAAAATGCTCATTATTATTTAAACA TTGACAGTTGTGGCCAGAGAAATTCCAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_166990; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_292772
| Blastp | Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic from Solanum with 60.93% of identity |
|---|---|
| Blastx | Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic from Solanum with 64.69% of identity |
| Eggnog | Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (By similarity)(COG0058) |
| Kegg | Link to kegg annotations (102603391) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019445910.1) |
| Pfam | Carbohydrate phosphorylase (PF00343.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |