| Id Trinity | TRINITY_DN49151_c5_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_292742 |
| Sequence | GATAATACCAAATGCAAGAAAGAATAAAAAGGATAAGAAGATAAAGACAGACTCCATCTTCTATCACTGACTTCTCCCCTTTTTCCTCACAGGTCACAAC ATTATTTCTACACATACTGAATTAGAGTATTGCAGCAATGGCTGCTCTACCGTTCTCATCAATCTCTAGGCATGCCAACTCTCCTTTACATTACAATTCC AAGTCAAGCATCACAGGTTTCAATCAAAGAAACAGTATTTGCTGGCTGTTTTTCATCAGAAAATCAAACTCCACAAGGGCACTAAGAAAGCTGGTTGTTA AGAATGTTGCCAGTGATAAAAGGCAGGAACTGAATGAACCATTGTCTGAACAAGGCACTTTGGATAATTTTGTAGCAGATTCTGCATCTATTGCTTCTAG CATCAAATATCATGCTGAGTTCAAGACATCCTTTTCTCCAGAGAAGTTTGAGCTTGGTAAGGCATACCTTGCAACTGCACAAAGTGTCTGTGATTCACTC ATCATAAATTGGAATGCAACATATGACTATTATGAGAAGATTAATGTTAAGCAAGCTTATTATATGTCTATGGAGTATCTACAGGGCAGGGCATTGCTAA ATGCAATTGGTAATTTACAACTCTCGGGTCCTTATGCTGAGGCTCTCAGAAAGCTGGGTCAAAATTTAGAAGATGTGGCTAATCAGGAACCAGATGCTGC CCTTGGGAATGGTGGATTAGGTAGACTTGCTTCTTGTTTTTTGGACTCATTGGCAACACTTAATTACCCTGCATGGGGATATGGACTTAGATACAAGTAT GGTTTATTCAAACAGCTTATAACAAAGGATGGTCAGGAGGAAGAAGCTGAAAGCTGGCTTGAGGTATTATTCTGCCGTCCCAGATCTTGTCGCATACATT GTACGGGACAGGATCTGGGACAGCGTATCTCTATTCTTATTTATATGCATCAATCATTAGTTAATGGCTTGAAGCTGTTTTTCATATTAGGGTAGGTTTG AATGGTTCTTTAATTCTTTTATTGCTATCTATGCGTGCTTTGCAAGGTTATTCCTATAAGCAAGTTACAAGTTTTTTTACTGATTGAAGTGACTTTACAG ATGGGAAATCCTTGGGAAATTCAGAGAAATGATGTATCTTATCCAGTTAAGTTCTATGGAGAAGTTATTTCAGGGCCAAATGGAACTAAACAGTGGATTG GAGGAGAAAATATATCAGCTGTTGCTTATGATGTTCCAATACCTGGATACAAAACTAGAACAACTATTAACCTGAGATTGTGGTCCATTAAAGTTTCACC AGCACAATTTGATTTACAAGCTTTCAATACGGGAGATCATGCCAAAGCATATGCTGCCATGAACAATGCAGAGAAAGTATTTCGATACTCCTTTATAAAC TCTATACCCAAATTTGACCCAAAAAATTACTTCTCCTGATTTAGTCTCGGAGAAATGAAAAATCTCAATTTGTTAAAATGTCGACCAAATTATTCATTTT CAGGACAAATTTTAAGAACATATCAAATAGGGGTCACATTTTTTATCGGTTGTGGATATTAAGTCCTTCTCTTTTTAACATTTAGAATGTTGTAATTATG ATACTTTTGCTCCCAAATTTAGTGTCCCCTGTAAACTTTTAAGGTTTGTTTGGGACATTTTTGTAGGAGAAGGCTTTGGAGCCGTCTCAGCACTATATTT CATGCCTCCTTCCTCCTTCAAAACTCAAATCGCAAACAAAGCTAAAGGGGTATAATGAAAGGTTATATATGCCTAGTTGCCCACTAATAAAACGAGAAGT AAATTACATAGATATGAAGAATAGATAGCTTTTACTCTTCTTGTTTCAAATTGTAATGGAGCCTTCTTCTCATCCACCAATAATCAGAAACGTTTATTTG CATATAAAATTTAAGTTAATTGGACAACCTGCATAAATCACTAGTGATTCTCATTTTTTTATGTTACATTGCAAACAGATTTGCTATGTGTTGTACCCTG GAGATGAATCCTTAGAAGGAAAGATACTGCGATTGAAGCAACAATATACATTATGCTCTGCATCTCTCCAGGATATTTTTGCACGCTTTGAAAAGAGATC AGGAAATACAGTAAACTGGGACACTTTTCCAGAAAAAGTGGTGGTTCAAATGAATGATACTCACCCAACACTCTGCATTCCTGAACTGATTAGGATATTG ATAGATGGAAAGGGTTTAAGCTGGGAAAAAGCTTGGGATATTACCAAAAGAACGGTTGCTTACACAAACCACACAGTTCTGCCGGAAGCGCTAGAGAAAT GGAGCTTGACACTTCTGCAGGATTTGCTTCCTCGACATGTGGAGATAATAAGAAGAATAGATGAAGAGTTCATACTTGAAATTATTTCCAAGTATGGGAC ACATGATCTTGACTTGATACAACAAAAGCTTAGAAAGATGAGAATACTAGAAAATATTGAGTTACCCAACTCAGTGATAGAGCTGATTAATAATTTAAAG AAGGCTCCTGCCTCTGAGGATGTTAAGGAAATTGGTCTTAATGATAATGATATAAAGGCAACAGAAGAGAAAGAAGATGATGAAGTCGGGGAAGAGGAAC AACAACAAGAAGAAGAAGAAGATAACAATTCTACTAGGGAGGATACTGATAAGAAAACGGAGTGGACATTCAAAGTTGATCCGAATTTGCCAAGGATGGT TCGCATGGCTAATCTTTGTGTTGTTGGTGGACTTTCTGTGAATGGAGTAGCTGAGATTCATAGTGAGATTGTGAAAGATGAAGTTTTCAATGAATTTTAC AAGTTGTGGCCAGAGAAATTCCAGAATAAAACAAATGGGGTGACCCCTAGAAGATGGATCCGTTTTTGTAATCCTGATCTTAGTAACATCATAACCAAGT GGATTGGAACAGATGATTGGGTAACTGATCTTCAGAAGTTGGCTGTACTTCGCAAGTTTGCAGATAATGAGGATCTACAATTGGAGTGGACAGCATCCAA AAAAAGAAACAAGATTAAGGTTGCATCATTTCTCAAAGAGAAAACTGGTTATGTTGTCAGTCCAAATGCAATGTTTGATGTACAGGTGAAGCGAATTCAT GAATATAAGCGGCAATTACTGAATATTTTGGGAATTGTTTATCGCTACAAAAAGATGAAAGAATTGAGTGCCGAAGAAAGAAATCAAAAGTTTGTTCCTC GGGTTTGTATTTTCGGAGGAAAAGCATTTGCAACATATGTTCAAGCCAAGAGGATTGTAAAATTCATCGCAGATGTAGGAGCTACAGTCAATCATGATCC AGAAATTGGAGATCTTTTGAAGGTTGTATTTGTCCCTGATTACAATGTCAGTGTTGCTGAAGTGCTGATTCCTGGCAGTGAGTTGTCCCAGCACATTAGC ACTGCTGGAATGGAGGCTAGTGGAACAAGCAACATGAAATTTGCAATGAATGGGTGTGTACTTATAGGAACTCTTGATGGTGCTAATGTTGAAATAAGAG AAGAGGTTGGAGAAGATAACTTCTTTCTTTTTGGTGCACGAGCTAACGAGATCGCTGGGCTGCGGAAAGAAAGAGCTGAGGGAAAGGCAAGTTTGAAACT AAACCGGAAAACAAGAAACAGCATTTGGTGAAAATAAACACAAAATCCTAGTTACTACAAAAGCTTAAACTAGCTCACCTTTCTAATCTCAGCAATGAGA TCATGATATTAATTCCCATATAATGTATTAGCTTAAGTTCTGGATATTATAAGAATATTAAGTTTTAAAGTCATAAAATTTGGCTTCTATAGATCCATTA AGCCATTATTATTTATGTCTTAACATAGACCCAGTGGACTTATCATAATAATCACAATCTTTTATGGTATCTTCCTTACTGTAAATGCAGTTTGTATCAG ACCCAAGGTTTGAAGAAGTAAAGACATATGTTAGAAGTGGTGTTTTTGGCCCCTACAACTATGAAGAATTGATGGGATCATTGGAAGGAAATGAAGGGTA TGGTCGTGCCGATTATTTCCTTGTTGGCAAGGACTTTCCTAACTACTTGGAGTCCCAAGAAGCAGTTGATCAGGCATATCGTGATCAAAAGAGATGGACA AGAATGTCAATTTTGAACACAGCTGGTTCATACAAATTCAGTAGTGACCGGACTATTCATGAATATGCTAGAGACATATGGAAAATTGAACCTGTTGTCT TACCTTGAAAAGTTACATGTTGAGTTTTTTAGCATATTCAGCTTGTTCCTTATCTCAGAATTAAGTTCAGAAGGGCTTGAAAACTGAAGAAGAGGTTAAG TTCACTTGAATAGCCATGCAAAGAATATGTGAGCTTTTGTTGCCCCGGGAGAGTAAAGCTTATCTTCATAGCATTTTGTAATACATTCCCATTCTAAACT TTTCAATCATATTGAAATTAAATTAAATTTCAATCTTCAATTTAAGACACATGGAATGATATATTTTAACTCTGTGGAACAATAGATTTTCCCCAAGCAT AGAAATGCTCATAAGGATTTAGGGAGTCATGCAGGATCAAGTAGAATTGTTTATCACTTTTCAACCAATATTTTTCTCAGAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_166990; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_292742
| Blastp | Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic from Solanum with 72.6% of identity |
|---|---|
| Blastx | Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic from Solanum with 74.91% of identity |
| Eggnog | Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (By similarity)(COG0058) |
| Kegg | Link to kegg annotations (102603391) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019445910.1) |
| Pfam | Carbohydrate phosphorylase (PF00343.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |