| Id Trinity | TRINITY_DN49151_c5_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_292743 |
| Sequence | GTTTCCTTCATTCCTTGTATCTTGATGGAATTGATGGTAAAACTTCATTAGAAGGAGTCTTTAGGTGTTTAATCATTTAATTAACCTAGCAACTTCTTTA TGCAATATAGCAGTGTCCTCTTGAAATTAAATGGATGCTCTACTCTAATCTTCTCCCAGTCTTCATGTTCTATTGAGCTAAAACATCCAAATTTGTAAGT AAAGTCTAGCTTAACAATTGCAGGCACTTTGGATAATTTTGTAGCAGATTCTGCATCTATTGCTTCTAGCATCAAATATCATGCTGAGTTCAAGACATCC TTTTCTCCAGAGAAGTTTGAGCTTGGTAAGGCATACCTTGCAACTGCACAAAGTGTCTGTGATTCACTCATCATAAATTGGAATGCAACATATGACTATT ATGAGAAGATTAATGTTAAGCAAGCTTATTATATGTCTATGGAGTATCTACAGGGCAGGGCATTGCTAAATGCAATTGGTAATTTACAACTCTCGGGTCC TTATGCTGAGGCTCTCAGAAAGCTGGGTCAAAATTTAGAAGATGTGGCTAATCAGGAACCAGATGCTGCCCTTGGGAATGGTGGATTAGGTAGACTTGCT TCTTGTTTTTTGGACTCATTGGCAACACTTAATTACCCTGCATGGGGATATGGACTTAGATACAAGTATGGTTTATTCAAACAGCTTATAACAAAGGATG GTCAGGAGGAAGAAGCTGAAAGCTGGCTTGAGATGGGAAATCCTTGGGAAATTCAGAGAAATGATGTATCTTATCCAGTTAAGTTCTATGGAGAAGTTAT TTCAGGGCCAAATGGAACTAAACAGTGGATTGGAGGAGAAAATATATCAGCTGTTGCTTATGATGTTCCAATACCTGGATACAAAACTAGAACAACTATT AACCTGAGATTGTGGTCCATTAAAGTTTCACCAGCACAATTTGATTTACAAGCTTTCAATACGGGAGATCATGCCAAAGCATATGCTGCCATGAACAATG CAGAGAAAATTTGCTATGTGTTGTACCCTGGAGATGAATCCTTAGAAGGAAAGATACTGCGATTGAAGCAACAATATACATTATGCTCTGCATCTCTCCA GGATATTTTTGCACGCTTTGAAAAGAGATCAGGAAATACAGTAAACTGGGACACTTTTCCAGAAAAAGTGGTGGTTCAAATGAATGATACTCACCCAACA CTCTGCATTCCTGAACTGATTAGGATATTGATAGATGGAAAGGGTTTAAGCTGGGAAAAAGCTTGGGATATTACCAAAAGAACGGTTGCTTACACAAACC ACACAGTTCTGCCGGAAGCGCTAGAGAAATGGAGCTTGACACTTCTGCAGGATTTGCTTCCTCGACATGTGGAGATAATAAGAAGAATAGATGAAGAGTT CATACTTGAAATTATTTCCAAGTATGGGACACATGATCTTGACTTGATACAACAAAAGCTTAGAAAGATGAGAATACTAGAAAATATTGAGTTACCCAAC TCAGTGATAGAGCTGATTAATAATTTAAAGAAGGCTCCTGCCTCTGAGGATGTTAAGGAAATTGGTCTTAATGATAATGATATAAAGGCAACAGAAGAGA AAGAAGATGATGAAGTCGGGGAAGAGGAACAACAACAAGAAGAAGAAGAAGATAACAATTCTACTAGGGAGGATACTGATAAGAAAACGGAGTGGACATT CAAAGTTGATCCGAATTTGCCAAGGATGGTTCGCATGGCTAATCTTTGTGTTGTTGGTGGACTTTCTGTGAATGGAGTAGCTGAGATTCATAGTGAGATT GTGAAAGATGAAGTTTTCAATGAATTTTACAAGTTGTGGCCAGAGAAATTCCAGAATAAAACAAATGGGGTGACCCCTAGAAGATGGATCCGTTTTTGTA ATCCTGATCTTAGTAACATCATAACCAAGTGGATTGGAACAGATGATTGGGTAACTGATCTTCAGAAGTTGGCTGTACTTCGCAAGTTTGCAGATAATGA GGATCTACAATTGGAGTGGACAGCATCCAAAAAAAGAAACAAGATTAAGGTTGCATCATTTCTCAAAGAGAAAACTGGTTATGTTGTCAGTCCAAATGCA ATGTTTGATGTACAGGTGAAGCGAATTCATGAATATAAGCGGCAATTACTGAATATTTTGGGAATTGTTTATCGCTACAAAAAGATGAAAGAATTGAGTG CCGAAGAAAGAAATCAAAAGTTTGTTCCTCGGGTTTGTATTTTCGGAGGAAAAGCATTTGCAACATATGTTCAAGCCAAGAGGATTGTAAAATTCATCGC AGATGTAGGAGCTACAGTCAATCATGATCCAGAAATTGGAGATCTTTTGAAGGTTGTATTTGTCCCTGATTACAATGTCAGTGTTGCTGAAGTGCTGATT CCTGGCAGTGAGTTGTCCCAGCACATTAGCACTGCTGGAATGGAGGCTAGTGGAACAAGCAACATGAAATTTGCAATGAATGGGTGTGTACTTATAGGAA CTCTTGATGGTGCTAATGTTGAAATAAGAGAAGAGGTTGGAGAAGATAACTTCTTTCTTTTTGGTGCACGAGCTAACGAGATCGCTGGGCTGCGGAAAGA AAGAGCTGAGGGAAAGGCAAGTTTGAAACTAAACCGGAAAACAAGAAACAGCATTTGGTGAAAATAAACACAAAATCCTAGTTACTACAAAAGCTTAAAC TAGCTCACCTTTCTAATCTCAGCAATGAGATCATGATATTAATTCCCATATAATGTATTAGCTTAAGTTCTGGATATTATAAGAATATTAAGTTTTAAAG TCATAAAATTTGGCTTCTATAGATCCATTAAGCCATTATTATTTATGTCTTAACATAGACCCAGTGGACTTATCATAATAATCACAATCTTTTATGGTAT CTTCCTTACTGTAAATGCAGTTTGTATCAGACCCAAGGTTTGAAGAAGTAAAGACATATGTTAGAAGTGGTGTTTTTGGCCCCTACAACTATGAAGAATT GATGGGATCATTGGAAGGAAATGAAGGGTATGGTCGTGCCGATTATTTCCTTGTTGGCAAGGACTTTCCTAACTACTTGGAGTCCCAAGAAGCAGTTGAT CAGGCATATCGTGATCAAAAGAGATGGACAAGAATGTCAATTTTGAACACAGCTGGTTCATACAAATTCAGTAGTGACCGGACTATTCATGAATATGCTA GAGACATATGGAAAATTGAACCTGTTGTCTTACCTTGAAAAGTTACATGTTGAGTTTTTTAGCATATTCAGCTTGTTCCTTATCTCAGAATTAAGTTCAG AAGGGCTTGAAAACTGAAGAAGAGGTTAAGTTCACTTGAATAGCCATGCAAAGAATATGTGAGCTTTTGTTGCCCCGGGAGAGTAAAGCTTATCTTCATA GCATTTTGTAATACATTCCCATTCTAAACTTTTCAATCATATTGAAATTAAATTAAATTTCAATCTTCAATTTAAGACACATGGAATGATATATTTTAAC TCTGTGGAACAATAGATTTTCCCCAAGCATAGAAATGCTCATAAGGATTTAGGGAGTCATGCAGGATCAAGTAGAATTGTTTATCACTTTTCAACCAATA TTTTTCTCAGAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_166990; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_292743
| Blastp | Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic from Solanum with 74.83% of identity |
|---|---|
| Blastx | Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic from Solanum with 76.62% of identity |
| Eggnog | Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (By similarity)(COG0058) |
| Kegg | Link to kegg annotations (102603391) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019445910.1) |
| Pfam | Carbohydrate phosphorylase (PF00343.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |