Id Trinity | TRINITY_DN49163_c2_g3_i3 |
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Name Transcript | Ll_transcript_290565 |
Sequence | AATCGGCTCAATTACAACAACGTTATCCATCGTTTCTATCTTCTTCGCTTTGTCGTTTTATTTCCGCCCAACCATGTCATCCACGTGGCGGTCAACAAAG AGCTTTAAATACTCGCTCTCAAAACACTGATAACGTGTTTTCTCCCTCCTTCTCTTTCTTCTTCTCACACCCTCATGGAAACTCGTCTTCTTTATTTCAT ATTTATATCCAATCTTTCATTTTTCAAATCAAACCCGTTTTATACAGATTAACCCAAAACCTTATATTTTCCCATCCATTTTCTTTATCCAAGAAAAAAT AATCCTTTTTAATTTTGTGGGTTTTCTCTCTCTCTGAAATTGTGTTTTATGGGCTTGTATAAGAATCTGGTTGGATTTTGAATTGTGAATGAAGTTTTGA TTTTTCTGCGGTTTTCGTTAAAGGGACAATAAGATCTCGATGTCTGCAGGGACATCTTCGTATTGGTGTCATAGGTGCAGCCGTTCAGTGAGGGTATTGA TGCCGGACATGGTTGTTTGTTCCGATTGCGGCGGCGGTTTTCTCGAGGAGATTCAGCATCCGGCGCGTGCTATTCACGCGGAAGAGGGCCTTCAGCGGTT CCCGGCAGCACCGATGAACATGGGTGGTCAGCGTCCAACTTTTGATCAGAATACTCGCCCCCGTTTTCGCCGAAGCCCCCGCATCAGTGGTGACCGGGCA CCGTTCAATCCGGTCATCATCCTGCGCGGCAGCCGTGGCGGTTCCACGGAGGGGGCTGCTGCTGTGGCTGCGGCGCAGGATGACCGGGATGGTCGTGGGT TTGAGCTTATGTATGATGATGGTGCAGGTTCTGGTCTTAGGACTTTGCCTCCTAGCATGTCTGAGTTTCTTCTTGGATCTGGATTTGATAGGATATTGGA ACAGCTTTCTCCAATTGAAATCAATGGTATTGGAAGGGTTGAACACCCTCCTGCTTCAAAAGCTGCAATTGATTCATTGTCAACAATTGAGATTAGTAAG AATCATTTAGAATTGGAATCACATTGTGCTGTTTGTATGGAACCTTTTGAATTATGTACTTCAGTTAGGGAAATGCCTTGTAAGCATATATACCATGAAG AATGCATTCTTCCATGGCTTGCACTTCATAATTCATGCCCTGTTTGTCGTAGCGAATTGCTTGCTGATACTATACCCTATCAGAGTACACCTTTAATGGG GAATTCGACGAATTCCGTTGCTATGAATGAGAATGAGAATGTAGGGTTGACTATTTGGAGGTTACCAGGTGGAGGGTTTGCTGTAGGGAGGTTATCTGGT GGGAGAAGAGGTACTGAGAGAGAGCTTCCGGTTGTTTATACGGAAATGGATGGTGGTTTTAACAATGGCGGCGAGCCTAGGAGGATTTCTTGGCCATCTA GAGGGAATAGAGGAGGAAGAGAGAGTGGTGGTTTGCGTAGATTTTTCCAGAACATGTTTGGTTGCTTAAGAGGTGGTGGAGTTGGAACTCGGCAACCTAT TTCGATTTCAACCTCTCCATCCATCACAAGGGCAAGTTCGTCGCATTCCAATGCGAATCCCTCCGTGCGTTCTCGCAGAACTTGGTCTATGGATGTGAAC AGTGGACTGAGGTCATGGTAAATGCAGCCAGCTTAAACAAGTGGGAAGGCTAAAAATATGAACTTTGTTTTGATTGTATTCCCCATCTGAGACAAGGGAA AGTTGTGTTTAAGGGTCATATGTATTGGTTGGTCAATGTGTACATAATCGGATGGATTCGAGCCTACAATGTAATGCAATCAATGGGGTTTTGCAACTCT CACATTTTCAGCTATAGTTAGCCTCAGTTTATGACGATCTTTCAAATTCATTACATCATTTGCTATTTTTATTCTCAAGGAAATACATTAGTTAAAATGC ACGGTAAGCTTGTAGCCTTGAATTGTTTGTTGATTATGATTTATTTGATACTAAGCTATAAGGTCAATTTTACCACACCATGTTTTGTATAATTTTGCTA TTCACCGCAAAGCAATGCAATGAACCATTTCTCCTGAATGTCTTTGTAGGCAATAATTTAAATCTTGTATTATCCCCATTTGTGAGGTAGATTGTTACTC CTAGTTCATGGCATCTGTAATAGCTTTCCCCAAATGAGTGTGTGCCCTCGTGTTAGCAAAACACCTTTTTACGAATAAGGTAAATATATCATTTTATGTT TTATTAATAGAAGAAAAGTTTCTTTTCCATCGTTTGGTTGGAAAGAAAACAAAGGAAGGAAAGAAAAATCATATTTGCTCTTAACTTATATTAATAAGGC TTGTTTTTTTTTGTTGTCTGAACAATTTTCAATTTATTAATATACATTTTTTCTTTCATATCATATAATTAAAAATCATTATTTTTACTATGTTTCTTTT CTTCGATTTTCATTTCACACATTTTTTTCTCTTAAACCAAATACAATATAAATAAAATTATAACTTTATTATTACAAAAAAAATTAATTTTATTAAAATA ATTTATTTATTTCTTAAATCTTTTTAAAAAATTAGATATATGAAAAAAATTAAGTTACTTTTATTGCTTTGATTCTTATTTATACAACTAAAAAGATGAT AGGATACCTTTATGTTTTCTTTTCAATATTATATAGAAGACTCAAGTGAATAAAACAAACAAATACAATTATGTAGTGGGACTTATATCTTTATGTTATT ATCCATGTTTTTTCATAATTAATTATAAGAGTGTAATAGCTATATATGTACTGTCATGTAAAGATTTATATACATACAGTAGATCATCCCATTTATTTGT ATTATTCTTTATGGAAGAGTCCATAATAATTAGACATGAATGACAAATGACACAATAGCAGTATGTAAAACTCATACATTGTTACTACATATATTTTTTC TTTAATTATAATTATATTTTTCCCTCCATTTTTTACCATATCAAACAATCTAAAAAATTATCATATTTTCTACTCATTTTCTTTCCTTAACTTTTTTCCA TAAACCAAAATATAGTGTTTGATTATAATTATTAATGTGTATTTGGATGGGAATAACACCATAAACACTTGTGAAATACTACTAAGTTTTGTCTTTATTA CTACTATTTCGACTTAAGGAGACTCATTAAAAGTCTTCTAAGTGGTGGGAAATAAGAAATGAGAAATGGAAAATGGGTAGGTAGTGTATTGGGGAGCATA TATTTTGTAAACTTCTTATAATTGGTCAGAAAAACAATTAAATATTACATTTTTAACTAAAATGTATTTTTGGGATAGAAAATATATTTCCAGTATATTG TCGGTTCGAACACAAACTCTCCCACTACTTATCTGGAGATTAATCAAGCGATATAGAATAAACATTATACATATATATTGAAGTGTTCATTATCTAAAAA TAAATGTGTCATCATTCTTAAAAAATACCAAATAAGTCTTCAAAATTTTAAATTGTTGATAAGAAGTATAAAACTAATTCATTCATGGATTTTAAAGTGC CACGTACCAAAGAATCCATTGGAAGGACCATTGTAGTGGTATTTTTTAAAATTGGAAGGATTTATTGTTCCCACTTTTATTTAGTGCAATAAGTCAATGA AAGTTGCATTTTTGAGATAGGTTTATAAGCAACTATGAACTCAACTATCTTTGTACGTCTTTATTCTTCTTCTTTTCTCCTCTTTTATTTCTCACTTTGC TTTGTCTTTTTCTTTGTATTATCCGAAATTTGAACTTTTATGTTTTGATGCATCTAATTTTGATTAATTTCTTTTCATTCTTTCAAAAATGACAAGAGAA AACAATGAAACTTTCACAAATTTATCCATAAAAATATGCAAAAAGACAATTGTTTGAAAGAGTTTCAAGCTAAGTATTTTAAATCGTATGCATTACTATT TTATTTATGAAATAAAACAAAATTTGATTTTATAAATGGTTGATATTTTAAAACCAATGCAATATTCCCCAATTTTTTAATTAACATATTTTTTGTTTTA GACTTCTTAATTCTTCATCGGCAAGGCTTGGACAGAATAGGAAAGCAAGTGGATTATTAATATAACAAAAATATAATTCTCATCACCTAAGAAATGGGCC AAGAAAGTGGTAAGTGAAGTGGGTGTGAAGAACATTTTAGCTCCTGATTTTGGCATGGTTTTGATGAAGACACCACCATCACCAGAAAGAAGAAAAGGAA GATTACTTATGAAGACAAAAGAAGATCAAAGCTTCAAGACATTAGATGAAGTCTTTATAGGTACTTCTATCCTACACTCTTAGTATATACAAAGTACTAA TGCTCAAACTATTTTTTAG BLAST |
Tissue | pods |
Gene name | LI_gene_167080; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_290565
Blastp | Probable E3 ubiquitin-protein ligase RHC2A from Arabidopsis with 46.02% of identity |
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Blastx | Probable E3 ubiquitin-protein ligase RHC2A from Arabidopsis with 45.72% of identity |
Eggnog | zinc ion binding(ENOG41121N2) |
Kegg | Link to kegg annotations (AT2G39720) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019422227.1) |
Pfam | zinc-ribbon (PF14369.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |