Ll_transcript_290572

• Id Trinity: TRINITY_DN49163_c2_g3_i6
• Name Transcript: Ll_transcript_290572
• Sequence: CCCCCTCTCTATTCCCCATGGAAACCCTTGCCTTCCTGATTTCATTTTCAGAGTCATGATTTCATTTTCAAAGTAAACCCTTTTCACGCAGATTAACGCT CCTTATATTTTCTTCATTCATTTTCCTTATTAAAGGAAAAAGAAATATTCTCATATTCATTCCATCGCGTTTCTGATTTTGTTCATTCCATCGCGTTTCT GATTTTGTTCATTCCATCAAAAGTTGTGGTTTATTTGTTTGGATAAGAATCTGGTTGGATTTTAAATTCTGGGTGTGGATCAAGTTTTGATTTTTCTGCA GTTTCGAAAAGGGTTATTGAGATCTCCATGTCTTCAGGAACATCATCGTATTGGTGTTACAGGTGCAGTCGTTTCGTTAGGGTATCGAGGCAGGACACGG TGGTTTGTCCAGATTGTGACAGCGGTTTCATCGAGGGAATCGAGCAACCGGCGCGTGCTCTTCACGTCGGCGGACGCCGGCGGCGGTTTCCCGAAGCTGC GATGTATATGATTGGCCAGCGCCCAAGTTTTGATCAGAATTCTCGCCCCCTTATTCGTCGAACCCGCCGCAATGGTAGTAACCGGTCACCGTTCAATCCG GTCATCGTCCTGCTCGGAAGCGGTGGTGGTGGTTCCACGGAGGGGGCAGCTGAGCAGGACAGCGCGGAAGGTCGCGGGTTTGAGCTCTTTTATGATGATG GTGCAGGTTCTGGTCTTAGGCCTTTGCCTCCTAGCATGTCTGAGTTTCTTCTTGGATCAGGAATTGATAGGTTATTAGAACAGATTTCTCAGATTGAAAT CAATGGTATTGGAAGGTATGAACACCCTCCTGCATCAAAATCTGCAATTGATTCATTACCAACAATTGAAATTTGTGATGGTCATTTAGAATTGGAAACA CATTGTGCTGTTTGTATGGAGCCTTTTGAATTTGGCACTTCAGTTAGGGAAATGCCTTGTAAGCATATATACCATGAAGAATGCATTCTTCCATGGCTCG CACTTCATAATTCGTGCCCCGTTTGTCGCCATGAATTGCCTGCTGATACTGTCCCAAATCAGAATACACCTTTAACACGGAATTCGCCGAACTCTCTTGC TTCGAACGAAATTGAAAATGATGGATTGACTATTTGGAGGTTTCCAGGGGGAGGGTTTGCTGTAGGGAGGTTTTCTGGTGGGAGAGGAGGTGCTGAGAGA GAGCTTCCAGTTGTTTATACCGAAATGGATGGTGGTTTTAACAATGGTGGTGAACCCCGGAGGATTTCCTGGTCATCTAGAGGGAATAGTGGAAGGAGAG AGAGTAGTGGTTTCAACAGGTTTTTCCAGAACTTGTTTGGTTGCTTTAGAGGTGGTGAAGTTGGTCCCCGGCAACCTACTTCAAGTACAGCATCTCCATC CACCGGAAGGGCAAGTTCGCCACATTCCAATGTGGATCCCTCTCCACGTTCGCGCAGAACTTGGTCTATGGATGTGAACAGTGGAATGAGTTCATGGTAA ATGGTAGCTTAAACAAGCAGTGGAAGCTAAAAATATCAACTTTGTTTCGGTGTTCCCCAACTGAGACACGGAAAAAAGTTCTGTTTCAGGGTCATATTTG TCGGTTGGTCAATGTGCACTTAATGGGATGCACTTGAGCCTACAATGCACTGTAATCAACAGGATTTCACAATTCTCACATTTTCAGCTGCAAATGATGT ATGGTACGAGAGATCAATGTTGTTGTTTTGGATAGGGAATTGTTACTGTAAAAGTCATCAGTCATTGTCTATATTAACAGTAGCCAATAGGGACAAGAAG CAGCAGCAATGGCATAAACCAACAGAGAAGAACCAAATAGGAAGAAAACCTGTGTGGTATTTATGTAACTTTTGGGCAGGGAACATTATGATCATTATCT TTATTCTAGTTTGTTAATGAACCGAAACGCCTTCATATTTTTTTTTATTTTATGTCTCTTCTTGTTCAACATTCGTAAAATTAGTTAGCTTCAGTTTATG GTGATTTTCAAATTTATGACATCATTTGTCATTGTTTTTCTCAAAGAAACCCATAATGTTCATATGCATGATAAGCTTATTGCCTCAAATTGTTTGTTAA TGATGACTTATTTGCTGCTGGAGCTATAAGCTCACTTTTACCCCAACACCATTATATCTGTACAATTTTCTCTAAGAAATCCAATGTGAATTGAATCCTT GGTACCTCTTTGTAGGCTGATATTGTGACTGTAATATTGTTCATCTTGTGTATTCTCTGGTTTAGTTTGTGTTATGATACAATCAATAACTAACTACTTT GATTGGATCATAAAAAATAACAATATTACTTATAGGGGCATGGTTGACTGGTTGAGATCTAAAGACATGGTTTCGAGTCCCCGCTTGAATATTGTTAGTT TTATTTGGTTAGCTTCTCCATTAGAATTCTATCTGTTTAACATGTTCACGGCGATTGTAATAAGACAGCCCCTTGAGTTAGATGCAGGTCGCGAGATGGG AGTAAAGTACTAGTGAAGTTTCTTGGTGTTTGGTCCAACAAGATCAGTATTGTAGTGCTATTTTTGCTCTGGTGGTACAAGGACACTCACTGTTAATGGC ATTTCTGGACTGAACAGAAGGATCTATGTCGAATATGCCTATTCATCGATGGTTCTATGGTAATTGGTGTGTGAAAGCTCAATTTTTCATCCTACTGAGA TTCCATCTTTTGGGCAACCTAAAGGTTTCACATGTTTATTCATTCATGTTCCATTGTCTCTATCCTTGTTTACTAAAACAAAACCATTTACATTGTGTTA TTCTTTCATAAATAACAATATCCATCATTAAATATGTGAAGTATTTGTACAAATTCTAATGTTAATATTACATATTTGTATCTTTTATTATCAAATTCCT ACCAAATAATCCTTAAGAATCTGTAGTCAGTAACAATGATTAGTGGGTCTAATGCCCAA
• Tissue: pods
• Gene name: LI_gene_167080;
• Additional information: details;

Expression of Ll_transcript_290572

FPKM

• PAB: 32.4
• PNAB: 6.7
• PS1: 18.8
• PS2: 3.6
• PS3: 5.2
• PW1: 27.7
• PW2: 28.1
• PW3: 12.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_290572

• Blastp: Probable E3 ubiquitin-protein ligase RHC2A from Arabidopsis with 48.48% of identity
• Blastx: Probable E3 ubiquitin-protein ligase RHC2A from Arabidopsis with 50.78% of identity
• Eggnog: zinc ion binding(ENOG41121N2)
• Kegg: Link to kegg annotations (AT2G39720)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019419778.1)
• Pfam: zinc-ribbon (PF14369.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;