Ll_transcript_290575

• Id Trinity: TRINITY_DN49163_c2_g3_i8
• Name Transcript: Ll_transcript_290575
• Sequence: AATCGGCTCAATTACAACAACGTTATCCATCGTTTCTATCTTCTTCGCTTTGTCGTTTTATTTCCGCCCAACCATGTCATCCACGTGGCGGTCAACAAAG AGCTTTAAATACTCGCTCTCAAAACACTGATAACGTGTTTTCTCCCTCCTTCTCTTTCTTCTTCTCACACCCTCATGGAAACTCGTCTTCTTTATTTCAT ATTTATATCCAATCTTTCATTTTTCAAATCAAACCCGTTTTATACAGATTAACCCAAAACCTTATATTTTCCCATCCATTTTCTTTATCCAAGAAAAAAT AATCCTTTTTAATTTTGTGGGTTTTCTCTCTCTCTGAAATTGTGTTTTATGGGCTTGTATAAGAATCTGGTTGGATTTTGAATTGTGAATGAAGTTTTGA TTTTTCTGCGGTTTTCGTTAAAGGGACAATAAGATCTCGATGTCTGCAGGGACATCTTCGTATTGGTGTCATAGGTGCAGCCGTTCAGTGAGGGTATTGA TGCCGGACATGGTTGTTTGTTCCGATTGCGGCGGCGGTTTTCTCGAGGAGATTCAGCATCCGGCGCGTGCTATTCACGCGGAAGAGGGCCTTCAGCGGTT CCCGGCAGCACCGATGAACATGGGTGGTCAGCGTCCAACTTTTGATCAGAATACTCGCCCCCGTTTTCGCCGAAGCCCCCGCATCAGTGGTGACCGGGCA CCGTTCAATCCGGTCATCATCCTGCGCGGCAGCCGTGGCGGTTCCACGGAGGGGGCTGCTGCTGTGGCTGCGGCGCAGGATGACCGGGATGGTCGTGGGT TTGAGCTTATGTATGATGATGGTGCAGGTTCTGGTCTTAGGACTTTGCCTCCTAGCATGTCTGAGTTTCTTCTTGGATCTGGATTTGATAGGATATTGGA ACAGCTTTCTCCAATTGAAATCAATGGTATTGGAAGGGTTGAACACCCTCCTGCTTCAAAAGCTGCAATTGATTCATTGTCAACAATTGAGATTAGTAAG AATCATTTAGAATTGGAATCACATTGTGCTGTTTGTATGGAACCTTTTGAATTATGTACTTCAGTTAGGGAAATGCCTTGTAAGCATATATACCATGAAG AATGCATTCTTCCATGGCTTGCACTTCATAATTCATGCCCTGTTTGTCGTAGCGAATTGCTTGCTGATACTATACCCTATCAGAGTACACCTTTAATGGG GAATTCGACGAATTCCGTTGCTATGAATGAGAATGAGAATGTAGGGTTGACTATTTGGAGGTTACCAGGTGGAGGGTTTGCTGTAGGGAGGTTATCTGGT GGGAGAAGAGGTACTGAGAGAGAGCTTCCGGTTGTTTATACGGAAATGGATGGTGGTTTTAACAATGGCGGCGAGCCTAGGAGGATTTCTTGGCCATCTA GAGGGAATAGAGGAGGAAGAGAGAGTGGTGGTTTGCGTAGATTTTTCCAGAACATGTTTGGTTGCTTAAGAGGTGGTGGAGTTGGAACTCGGCAACCTAT TTCGATTTCAACCTCTCCATCCATCACAAGGGCAAGTTCGTCGCATTCCAATGCGAATCCCTCCGTGCGTTCTCGCAGAACTTGGTCTATGGATGTGAAC AGTGGACTGAGGTCATGGTAAATGCAGCCAGCTTAAACAAGTGGGAAGGCTAAAAATATGAACTTTGTTTTGATTGTATTCCCCATCTGAGACAAGGGAA AGTTGTGTTTAAGGGTCATATGTATTGGTTGGTCAATGTGTACATAATGCATGGATTCGAGCCTATAAAATCAACCGGGTTTTGCGATTCACACATTTTC AGCTGCAGATGATGTATGGTATGAGAGTTAATGTTGTTCATTTTGGATGAGGAATTGTTAATGTTTAAAACTCATTACTCATAATCTGTATTAAAAATAG TGAATAGGGACAAGAAACAGCAATGATAACAGAAACCAATGGAGAAGAACCAAATAGGAGGAGAATCTGTGCTGTATATGTGTAACTTTTGAGCAGGGGA ACATTATATAACCACTATATTTATTCTAGTTTGATAATGAAATGAAACACCTTCATATTGTTTTATTTATGTTACTTCTTGTTTGTCAAGGGTACAATTT AGTTAGCTTCACTTTATGATGATCTTTCAAATTTATGACATATTTTGTCATTGTTTTTCTCAAGGAAATTCACAAGTTCAAATGCATGGTAAGCAAAGCA ATGCAATGAATCGATTATAATTGCGTTTATCTATTGTATTATCTACATCGTGTTTTATCGATCAATGTAGTGTTTTTTTGTGATGCAATCAATTGCC
• Tissue: pods
• Gene name: LI_gene_167080;
• Additional information: details;

Expression of Ll_transcript_290575

FPKM

• PAB: 8.6
• PNAB: 2.6
• PS1: 6.8
• PS2: 2.5
• PS3: 3.2
• PW1: 8.3
• PW2: 9.9
• PW3: 6.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_290575

• Blastp: Probable E3 ubiquitin-protein ligase RHC2A from Arabidopsis with 46.02% of identity
• Blastx: Probable E3 ubiquitin-protein ligase RHC2A from Arabidopsis with 45.72% of identity
• Eggnog: zinc ion binding(ENOG41121N2)
• Kegg: Link to kegg annotations (AT2G39720)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019422227.1)
• Pfam: zinc-ribbon (PF14369.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;