Ll_transcript_291129

• Id Trinity: TRINITY_DN49168_c0_g1_i4
• Name Transcript: Ll_transcript_291129
• Sequence: AATGAATGAAAATTTGATTGTTCTTTGGTGCCACATTATCTGGGTAAAAAGAAGCCTCCTTCAACTGCAAAACCCTATACACTATTTTCTTTCTTCACAC TTTTGCTTCATACAGTTATAGCGAGTAATCATGGCAGAACTTCTGCCAATGAAAGATATTGAAGCCACTGCTTCACGTCTCGGAATCGATCTTTCCACCA TCGATCTTCATTCCATTCGCCTCCCCCACTCCGATAATGTTGGCATCGATAGTGATGATGAAGATGTTCTCAATGAGGAGAATCTGGAGTTTGAGTCTGG ATTTGGAAACATTATAGTCGTGGATAACCTCCCCGTTGTTCCGAAGGAAAAATTTGAGAAGCTTGAAAGTGTTATTCGTAAAATTTATAGTCAGATTGGT GTTATTAAGAACGATGGACTATGGATGCCTGTTGATCATGATAATGAGAAAACTTTGGGTTACTGTTTCATTGAGTACAATACCAATCAGGAAGCTGAGC TTGCTAAAGAGAGGACTCATGGATACAAATTGGATCGCGCACATATATTTTCGGTGAACATGTTTGATGACTTTGACAGGTTCATGAAAGTTCCAGATCA GTGGGCTCCTCCTGAAACCAAGCCATATGCTCCAGGGGAAAATCTTCAACATTGGCTAACTGATGCAAAAGCCCGAGATCAGTTTGTGATTCGTGCTGGT TCAGATACCGAGGTTCTATGGAATGATGCAAGGCATTTGAAACCTGATCCTGTTTATAAGCGTACGTTTTGGACTGAGAGCTTTGTGCAATGGTCGCCTC TGGGAACATACTTGGCAACAGTCCACAGGCAGGGGGCAGCTGTTTGGGGAGGTGCTTCAACCTTCAACCGTCTCATGCGTTATGCTCATCCACAGGTAAA ACTTATTGATTTTTCACCCGGTGAGAAGTATTTGGTAACATATAGCAGCCATGAACCCAGCAACCCCAGAGATGCTAATAGAGTTGTGATAAATATATTT GATGTGAGGACTGGTAAAGTTATGAGGGATTTTAAAGGAAGTGCTGATGATTTTGCAATCGGAGGTGCTGGTGGTGTCACTGGGGTATCATGGCCTATTT TCAAATGGAGTAATGGAGGCGATGATAAGTATTTTGCAAGGATGGGGAAAAATGTACTCTCTGTATATGAGACAGAAACCTTTTCTCTCATTGACAAAAA GTCCTTAAAGGTTGAAAATATAGTGGATTTCAGCTGGTCTCCAACTGATCCAATTATTGCACTCTTTGTTCCTGAGATGGGAGGTGGTAACCAGCCTGCT AGGGTAAGTCTGGTTCAAATCCCCAGCAAAGAGGAACTCAGGCAGAAAAATCTGTTCAGTGTCAGTGACTGTAAGATGTACTGGCAAAGCAATGGAGATT ACCTTGCCGTTAATGTAGATCGGTTTACAAAAACTAAGAAAAGCACATACACAGGCTTTGAGCTTTTCTACATAAAAGAACGTGACATACCTATAGAAGT TCTAGAGCTTGAGAACAAGAATGACAAGATCATTGCATTTGCTTGGGAGCCAAAAGGCAATAGGTTTGCAGTTATCCATGGAGACAATCCTAAGCCTGAT GTTAGCTTTTACACAATGAGGACTGCTCAGCACACTGGCCGAGTTTCAAAGCTCACTACTTTGAAAGGCAAGCAGGCAAATGCTCTGTTTTGGTCACCAG TAGGTCGCTTCATTGTACTAGCTGGGTTGAAAGGCTTTAATGGGCAGTTAGAATTTTACAATGTTGATGAACTTGAAACCATGGCTACTGCTGAACATTT TATGGCAACTGATATTGATTGGGATCCTACTGGAAGGTATGTTGCAACAGCCGTTACTTCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTC AATGGCAAACATCTCTATCGAATACTGAAGGATCACTTCTTTCAGTTCTTATGGCGTCCAAGGCCACCATCTTTCTTGAGTGCTGAGAAGGAGGAAGAGA TTGCAAAGAACTTGAAGAAGTATAGCAAGAAATATGAGGCCGAAGATCAAGATGTTTCATTGCTTCTAAGCGAGCAGGAGCGTGAAAAGCGTAGGGCATT GAAAGAAGACTGGGAGAAGTGGATCAACGAATGGAAGAGGTTGCATGAAGAAGAGAAGTTATACAGGCAAAATCTCAGGGATGGAGAGGCTAGTGATGAA GAAGAGGAATATGAGGCCAAGGACATAGAAGTTGAGGAAGTGATTAATGTATCAGAAGAGATCCTTCAATTTGAATAAGGTCAAGAGTGAAACCTATAAG CTGGGCTTATAGAATTCAGACACTGAATTCACTTGTCTAGGTGTTGTTAAACAACTTACTTCAAGTTGATCTTTGTAAAACCTAATTTTGTAGGGTTTTT TTAATTTATCCGTTGAATTATCCTTTTTTCTAATTTCATATGAAAGATAATTTTGCTGTTTCCTTTGGTCTAAGTCAGTTTCACCCCAATTCCGAAGTGT ATTTTGTACCTTAGTGGTTAAGGTACATTAATCTAACCCATTCGGTGAATTATTGAGATTATTATGCGTCACTACATGATAATCTGGTTCATTTCTCTAT CAAAATACAAGCAAAATGTATAAAGAGATTTGAATTCTCCTAAAGAAATTTAGAACACCCAAGTTGGATGCATAAATTACTTGGCAGAG
• Tissue: pods
• Gene name: LI_gene_167102;
• Additional information: details;

Expression of Ll_transcript_291129

FPKM

• PAB: 4.7
• PNAB: 47.9
• PS1: 43
• PS2: 47.3
• PS3: 46
• PW1: 29.1
• PW2: 22.2
• PW3: 19

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_291129

• Blastp: Eukaryotic translation initiation factor 3 subunit B from Arabidopsis with 76.77% of identity
• Blastx: Eukaryotic translation initiation factor 3 subunit B from Arabidopsis with 77.4% of identity
• Eggnog: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity)(COG5354)
• Kegg: Link to kegg annotations (AT5G27640)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019417208.1)
• Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;