| Id Trinity | TRINITY_DN49168_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_291131 |
| Sequence | AATGAATGAAAATTTGATTGTTCTTTGGTGCCACATTATCTGGGTAAAAAGAAGCCTCCTTCAACTGCAAAACCCTATACACTATTTTCTTTCTTCACAC TTTTGCTTCATACAGTTATAGCGAGTAATCATGGCAGAACTTCTGCCAATGAAAGATATTGAAGCCACTGCTTCACGTCTCGGAATCGATCTTTCCACCA TCGATCTTCATTCCATTCGCCTCCCCCACTCCGATAATGTTGGCATCGATAGTGATGATGAAGATGTTCTCAATGAGGAGAATCTGGAGTTTGAGTCTGG ATTTGGAAACATTATAGTCGTGGATAACCTCCCCGTTGTTCCGAAGGAAAAATTTGAGAAGCTTGAAAGTGTTATTCGTAAAATTTATAGTCAGATTGGT GTTATTAAGAACGATGGACTATGGATGCCTGTTGATCATGATAATGAGAAAACTTTGGGTTACTGTTTCATTGAGTACAATACCAATCAGGAAGCTGAGC TTGCTAAAGAGAGGACTCATGGATACAAATTGGATCGCGCACATATATTTTCGGTGAACATGTTTGATGACTTTGACAGGTTCATGAAAGTTCCAGATCA GTGGGCTCCTCCTGAAACCAAGCCATATGCTCCAGGGGAAAATCTTCAACATTGGCTAACTGATGCAAAAGCCCGAGATCAGTTTGTGATACGTGCTGGT TCAGATACTGAGGTTCTGTGGAATGACGCAAGGCATTTGAAACCTGATCCTGTGTATAAGCGTACATTTTGGACTGAGAGCTTTGTGCAATGGTCGCCTC TGGGAACTTACTTGGCAACAGTTCACAGGCAGGGGGCAGCTGTTTGGGGAGGTGCTACAACCTTCAACCGTCTTATGCGTTATGCTCATCCACAGGTAAA ACTTATTGATTTTTCACCCGGCGAGAAGTATTTGGTAACTTATAGCAGCCACGAACCCAGCAATCCCCGAGATGCTAATAGAGTTGTGATAAATATTTTT GATGTGAGGACTGGTAAACTGATGAGGGATTTTAAAGGAAGTGCTGATGATTTTGCAATCGGAGGTGCTGGTGGTGTCACTGGGGTGTCATGGCCTGTTT TCAAATGGAGTAATGGAGGAGATGATAAGTATTTTGCAAGGATAGGAAAAAATGTACTCTCTGTATATGAAACTGACACATTTTCTCTTGTTGACAAAAA GTCTATAAAGGTTGAAAATATAATTGATTTCAGCTGGTCTCCGACTGATCCGATTATTGCACTCTTTGTTCCTGAGATGGGAGGAGGTAACCAGCCTGCT AGGGTAAGCCTGGTTCAAATCCCCAGCAAGGAGGAACTCAGGCAGAAAAATCTTTTCAGTGTCAGTGACTGCAAGATGTACTGGCAAAGCAATGGAGATT ACCTTGCTGTTCATGTAGACCGGTTTACAAAAACCAAGAAAAGCACATATACAGGCTTTGAGCTCTTCTACATTAAAGAACGTGACATACCTATTGAAGT TTTAGAGCTGGAGAACAAGAATGACAAAATCATCTCGTTTGCTTGGGAGCCAAAAGGCCATAGGTTCGCAGTTATCCATGGTGATAATCCCAAGCCTGAT GTTAGCTTTTACTCAATGAGGACTGCTCAGCACACTGGCCGGGTTTCAAAGCTCACTACTTCGAAAGGCAAGCAGGCAAATGCTCTGTTTTGGTCACCAG TAGGTCACTTCATTGTACTGGCAGGGTTGAAAGGCTTTAATGGGCAGTTGGAATTTTACAATGTTGATGACCTTGAAACCATGGCTACTACTGAACATTT TATGGCAACTGATATTGAATGGGATCCAACTGGAAGGTATGTTGCTACAGCTGTTACTTCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTC AATGGCAAGCATCTCTATCGGATACTGAAGGATCACTTCTTTCAGTTCTTATGGCGTCCAAGGCCACCATCTTTCTTGAGCGCTGAGAAAGAGGAAGAGA TTTCAAAGAACTTGAAGAAGTACAGTAAGAAATACGAGGCCGAAGATCAAGACGTTTCGTTGCTGCTGAGCGAGCAGGAGCGTGAGAAGCGTAGGTTGTT GAAAGAAGAGTGGGAGAAGTGGGTGAATGAATGGACGAGATTGCACGAAGAAGAGAAGTTATATAGGCAAAATCTGAGGGATGGAGAGGGTAGTGATGAA GAAGAGGAATATGAAGCGAAGGACATAGAAGTTGAGGAAGTGATGAATGTAACAGAAGAGGTCATTGACTTTGAATATGATCAAGAATGAAACCTATAAC TGGAATTCATAGGATTCAAACACTGAATACTGTTAAACAACATGCTTCAAGTTTGATCCTTGTAAAACCCAGTTTTGTAGGTTTGTTTATTTATTTATTT ATTTGTGGAAGTATCTTTTTATCTAATTTAACATGGAAGATTGATTATTTTGCTATTCCCTTTGGGCAAAGCCACTTTCATTCATATTCAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_167102; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_291131
| Blastp | Eukaryotic translation initiation factor 3 subunit B from Arabidopsis with 76.03% of identity |
|---|---|
| Blastx | Eukaryotic translation initiation factor 3 subunit B from Arabidopsis with 76.81% of identity |
| Eggnog | Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome (By similarity)(COG5354) |
| Kegg | Link to kegg annotations (AT5G27640) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019435267.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |