| Id Trinity | TRINITY_DN49176_c0_g1_i16 |
|---|---|
| Name Transcript | Ll_transcript_292799 |
| Sequence | TTTCAGCTTTATTTTTAAAATCATGGGTTTCAGATTTCTGTGTTTTGGATAAAGTGGATGAAAGTTATAATTGTGGCTTCATGCACTTGATTACGTGGGT GGAACTTATAATTGTGCATGAACCTGAGCCAATGTATGGCACTCCCTCTATACTTAAAAGATGATTTGCATCTTCTCGGAGTCTTTCATTTGATGCACTA GGAAGAACTTCTAAGCCCTTACCACCCACCCCACTGGGTCAGTACCATCAAAACAGGGCAATTCTACTTTCTTTGCCAAAGACCGGTTGCTTCCTACCCT TGAATCTTCCCATTTAGAATCTTCCCATTTAGAATCTTCTTGCACTTTTGGAACCGACTTTTTGGTTGATTCGTCGTCATGATGAGACCTGAATTCATCT TCATCTTTGTTGACAAGGTGTATTTGGCAGTAAATAATTCTGACTGTATATAATATTTTGTTTCCTATCTTGTTTGGTCTATTTTAAGTAGTTTGTTATT GTAATTTATTCTCTCCTTAACTTAGAATTTCCTTCCTTGATTCTTGTCAATCACATATTGTATTTTTCTCTATAAAAAGAAGGAATCCCTGTACAGTTTA AGATCATAAATAATATTCCAAATATTTGAATTTGACATCAGAGCAAAGATCACTGCGCCTCTGATTTGCGGTAATGGCTGACAGTTCCTCAACCACCAAA GACTCGCAGCCTCCAAGACATGAGCAAAGAGTTTTTTTCGGTGAATCCCATTCTGTCCAAATCACCACCTTTCGACTCAATGGGTCGAACTATTTCCGGT GGTACCAATCTGTCCAGATGTATATGCGTGGCAGAGGAAAACTTGGATACCTCACTGGTGAGCGACCCAAACCAGACACCGATGACCCACATTATGCTGT TTGGGATGCTGAAAACTCCATGGTGATGACGTGGCTGATAAACTCCATGGAGGAGGACATTAGCAGCAATTACATGGGTTATTCCACAGCCAAAGAGCTA TGGGATAGTGTCATGGAAATGTATTATGATCTTAAAAATAAATCTCAGATTTATGAACTCACCTTGCTAGCCAGAGAAATTCGGCAGGGAGGTCATAACG TGACGAAGTATTTCCACTCTTTGAAACGGGTATGGCAGGACCTTGATCTCTTCAACGCTTATAAGTGGAATTCAGCAGAGGATGCCAAACACCATCACCA GACAGCGGAAGAAGGTAGAATATTTCAATTTCTTGCAGGTCTAAATGAGGAGCTAGATGATGTTCGTGGCAGGGTCATTGGGAGGACAACCTTACCTTCA TTAGGTGAGGTCTTCGCTGAAGTTAGAAGAGAGGAAACCCGTAGAAGTGTGATGATGGGAAAGATCAAATCTGATCCACTTCCTCCTGAGACCAATGCTC TTGTTGTAGAACCTGCTGCCTTTAAGAGTTCAACCAACCAGAAGAACTTATCAAATCTTTGGTGTGACTACTGCATTAAACCACGTCATACCCGAGAGAA TTACTAGAGAATTCATGGCAAACCAGCACATCTAAAGGGCAACAAATCTGGTCCTAAAGTTCACAAGCCCTTCCCTATAACTCATGAGGCAGAAAAGACC TCATTGAGAAAGGAACAAGTTGAGGAACTTATAAGGTTGTTAAACTCTAATTTTTATCTGGTACTCCTAGTGGTTATGTGGCACAAACAGGTAATTTAAG TACCCCTAGCTCCCTCAACTGTACCTCAAATATGTGTGTACCATGGATCATTGATTCAGGTGCTTCGGATCATATGATCTGTCTTTCTTCTTTATTTAAA ACTTATTCTCCTAGTTCTGGAAATGAAAAAATTAGAATTGCAGATAGTAGTTTTCTGTAATTGAAGGGAAAGGGAAAATTACCTTATCTAAAACCATTGA ATTAAAAAATGTTTTACATGTACCCAAACTTTCCTATAATCTTCTCCCAGTTAGCAAAATCTGCTACGATTCCAATTGTAGTGTAAAATTCTTTGACACT CGTTGTGTTTTTCAGGACCAGATTTTGGGGAAGATGATTGGCAGTGCTAAGATGATGGATGAACTTTATTACTTTGAGGATACTTTCGAAAATAAAGAAG CTCAGGGCCTTAGTGGTATGAGTTCCACCCCTGTTAAAGACCGAATAATGCTCTGGCATAACAGACTAGGGCACCCAAATTTTCAATATCTCATGCATTT GTTTCCGGATTTATTCAAAAATATTGATTGTTCTTCTCTTAAATGTGAAAGTTGTGTTCTTGCTAAAAATCAGAGAGCTCCTTATTACTCTCAACCTTAT CATGCATCTAGACCTTTTTATTTAATCCATAGTGATGTTTGGGGTCCTTCAAAAATAACAACTCAATTTGGAAAAAGGTGGTTTGTAACTTTTATTGATG ACCACACCCGGTTATGTTGGATCTACCTTATGCATGATAAATCTGAAGTTCCAAATATTTTTAAAAGTTTTTCACAAATGGTAGAAACTCAATTTGACAC AAAAATCTCCATTTTGAGGAGTGGCAATGGACTTGAATATTTTAATAAGAATCTCAATGAGTTTCTCAAAAATAAAGGCATTCAACATCAATCGACATGT CCAAATACTCCTCAACAAAATGGCATTGCTAAAAGAAAAAATAAACATCTCCTAGAAGTAGCTCGTGCCATTATGTTTGAGAGTAATCTTCCAAAGTATT TTGGGGGGATGCTGTCCTAACAGCAGCCTATCTCATCAACAAAATGCCCACTAGTGTGTTAAATTATCGCACACCTTTGGACACTTTCAAAACCATTTTG CCAACATGTCGATTACATACTGATATGCCTTTAAAAGTGTTTGGTTGTACTGTTGTTATCACTACACCCTCCGCATCTCGGTCTAAACTAGACCCAAGGG CAGAAAAATGCATTTTTGTTGGATATTCTCCAAGCCAAAAAGGATATAGAGTCTTTAATCCGATTATGATGAAGCTTTGTGTTAGCATGGATGTTACCTT CTTAGAACATCAACCTTTTTTTCAAATAAATTCTCTTCAGGGGGAGAATGATATTGTGAGTGAAGACAATTTCTTAATTTTTTTACATTTGCATGAACCA TTGCCCATTCCTATTTTACATACCGAGAATACAGATTTAATTGATAAAACAAGTGTGGAAGAACATGTGGAAACTAGTCCTAAAATTTCTAAAGAAAATC TTATGTCAGACTTAGATGGATCCCGAGCAGGGAAAGAAATACCACAATCAAAAGAGGAGTTTCGTGTTTATACTCGGAAATATCCTAAAAGGATCAAAGA CCAATCCATCATCTCTGCACCAAACCAACCAGCAATCCCGGAAGAAGGCCAAGAAGGAATACCACGAGAAATTCAAGGTAACACTGAAATTCCCACTTCT AATATTGAACTGCCCATAGCTATTAGGAAAGGAACTAGAACCTGCACCCAAAAATTAAAAAAACCTAGCACAAGTCATCCCATTTCCCAATATATTTCCT ACCAAAATCTGTCTCAAAGTCACAAGGCCTTTACCTCAAAAATAACAAACATGTTTGTGCCTAGAAACATTAAGGAGGCATTAGATGATCCTAATTGGAG TTTAGCAGTCTTAGAAGAGTTTCAGCACTAAAAAAGAATGGAACTTGGGAGATTGTTGACCTGCCTCGTGAAAAAAAACAGGTGGGGTGTAAGTGGGTAT TTACCATTAAGTGCAAGGCTGATGGAAGTATAGAAAGGTACTAGGCTAGATTGGTAGCAAAGAGATTTACTCAAATTTACGGAGTAGACTATCACGAAAC GTTTGCTCCAGTCGCTAAACTTAATTCTGTTCGGATTCTTCTATCTCTTGCTACGAATTTTAATTGGCCTTTACATCAATTGGATGTAAAAAATGCTTTC TTCAATGGGAAACTAGAGGAATAAGTGTTTGAGTCTTCCCCCCGGATTTGAAGAAGAACTTGGAAGAAATAAGGTGTGTAAACTAAAGAAATCATTATAT GGGCTGAAGCAATCTCCAAGGACAAAGTTTGAGAGGTTTGGAACAGTGGTAAAAAGACTTGGATATATCCAAAGCCAAGCTGATCACACATTGTTTTATA AACATTCAGCAAATAATAAGATTGCTATCTTGATTGTATATGTTGATGATATTATTTTGACAGGAGATGATAGCTTGGAACTCAAAAGTTTGAGGGAAAA ACTTGCTAAAGTTTTTGAAATCAAGGAACTTGGTCCATTGAAATACTTTCTTGGAATTGAATTTTCAAGATCAAAAGAAGGTATCTTTATGAACCAACGA AAATATATTCTAGATCTTTTAAAAGAAACAGGATTACCTGGATGCAAAGCTGCAGAAACACCTATGGAACCTAACTTAAAGCTGCAACAAGCTGAAACAG AAAATCTGGTGGACAAAGGAACGTATCAGCGACTAGTGGGAAGGCTAATATACCTACCTCACACTCTTCCAGACATAGCATTTGCTGTAAGCATGGTAAG CCAGTTTATGCATGCACCAGGTCATGAACACTTAGAGGCAGTTTTTAGGATCCTAAGATACTTGAAGGGATCACCTGGAAAGGGACTACTTTATAAAAAC CATGACACTTTTAGGTAGAAGCCTACACTGATGCAGATTGGGTTGGGAGTGTGACAGACCGAAGATCAACATCAGGCTATTGCACTTTTGTTGGAGGAAA CTTGGTTAGTTGGAGAAGCAAAAAACAGAACGTGGTAGCAAGGAGTAGTGCAGAAGCTGGATTTAGAGCAGTTGCTCATGGAATTTGTGAGGCAATATGG GTGGAAAAACTGTTAAAGGAATTAAAGGTTTACAATTCTCCTCCAATAAAGCTATATTGTGATAACAAGTCTGCAATATCTATTGCACGCAACCCAGTCC TACATGACAGGACCAAGCATATAGAAGTTGATAAACACTTCATCAAGGAGAAGATAGAAAGGGGGCAGATATGTATTACATATGTTCCCACTGCAGAACA ATTAGCAGACGTCCTAACTAAAGGATTACCCAAGAAATCCTTTGACAACATAACTAGCAAGCTGTCTATGGAGGATATCTTCAAGCCAACTTGAGAGGGA ATGTTGACAAGGTGTATTTGGCAGTAAATAATTCTGACTATATATAATATTTTGTTTCCTATCTTGTTTGGTCTATTTTAAGTAGTTTGGTATTGTAATT TATTCTCTTCTTAACGTATGATTTCCTTCCTTGATTCTAGTATCACATATTGTATTTTCCTCTATAAAAAGAAGGAATCCCTGTACAGTTTAAGATCATA AATAATATTCCAAATATTTCAATTCATACGTATACATTGTTGTTGATCCTATCCAAGGTATTCAATTTACTACTTTACACCTTTGTGCGTGTTATGAAAT TTTATACTCTATGGTTGTGTTTTGAGTCATTTGGTAGATGAAGCAATTTTGATTACTTGAAAATTGGGTTTCAGTTGGAGGATGTGATGTTTATGTTAGA ACACTTCTGAATGAACTTGTGAGAGTGGTATTTCTTTTTCTTGGCTGGTATTTCTTCCAATACCAGCAATGCCTTTTAAATAGGCCCGAGATACCATTAT TTTTTGAATTGTTATCATGTGAAGGCAGCTTCAGAAAGGGACTTTCGACCAAGTAGGATGGCTGTTATTGGGAAACAGGTTGAGACATTTATCAGGGAGT TCTTTGATCAAAATCCACTTAGTCATGTTGGTCTGGTGACTATAAAAGATGGAATTGCTCATTCCTTAACAGAGCTTGGTGGCAGTCCTGAATCCCACAT CAAAGCTTTGATGGGTAAACTGGAATGCTCTGGTGATGCCTCCCTACAAGATGCACTAGAGCTTGTTCTTGGTTCTCTAAATCAAATTCCATCGTATGGT CATCGAGAAGTTCTGATCTTATATTCAGCTCTCAGTACATGTGATCCTGGTGATCTCATGGAAACCATCCAGAAATGCAAAAAGAGTAAAATAAGATGCT CTGTCATTTGTCTTGCTGCTGAAATGTTTATTTGCAAACATCTATGCCAAGATACTGGAGGAACTTATTCTGTGGCATTAGATGAGACCCATTTTAAAGA GTTAATTCTTGAGCATGCACCGTCACCTCCGGCAATAGCAGAGTATGCTACAGCTAATTTAATTAAGATGGGTTTTCCACAAAGAGCAGCTGAGGGTTCT GTCGCAATTTGTACATGTCATGAAGAGGCTAAAACCGGAGGGGGATACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCCACTCAATGTCGCA TCTGTGGATTGACCCTTATTTCTTCACCCCATTTATAACAGTTTCCCAAACACTTGTTTTGGTTGTCAACAAAGTCTTCTTTCTCAGGGAAAGTTTCTGT AGATAGGCAGTCAAGGTTGTTATTCTTCATACATTTGCAATTTTGACAATGCATATAATTTATCATCTTGGCCAACAATTTCTGTCAAATATAGGACTCT TTAAGGGTAAAATATCAGTAAAGATAGCAAATAGAGATGTAATTTCTTAAGTTAATCCATAGGGTTTTATCTACCAGATATTGTATAGAAAATTCATGAA TTGGTAATGGAAGTAATTTCAGGCTTCTTGTGTATACAACTTTATTAATTTAGCAGATCTTCATGTTAAAAGGATCTAGCCGTAGTAAGAGATTAGCAGT AGTACTATGTTACTATGAAGAGATGAAATTGGTTTTCAATTTATAAATACATAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_167143; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_292799
| Blastp | General transcription factor IIH subunit 2 from Arabidopsis with 78.76% of identity |
|---|---|
| Blastx | General transcription factor IIH subunit 2 from Arabidopsis with 70.5% of identity |
| Eggnog | Transcription factor(COG5151) |
| Kegg | Link to kegg annotations (AT1G05055) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_020998746.1) |
| Pfam | Ssl1-like (PF04056.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |