| Id Trinity | TRINITY_DN49176_c0_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_292782 |
| Sequence | TTTCAGCTTTATTTTTAAAATCATGGGTTTCAGATTTCTGTGTTTTGGATAAAGTGGATGAAAGTTATAATTGTGGCTTCATGCACTTGATTACGTGGGT GGAACTTATAATTGTGCATGAACCTGAGCCAATGTATGGCACTCCCTCTATACTTAAAAGATGATTTGCATCTTCTCGGAGTCTTTCATTTGATGCACTA GGAAGAACTTCTAAGCCCTTACCACCCACCCCACTGGGTCAGTACCATCAAAACAGGGCAATTCTACTTTCTTTGCCAAAGACCGGTTGCTTCCTACCCT TGAATCTTCCCATTTAGAATCTTCCCATTTAGAATCTTCTTGCACTTTTGGAACCGACTTTTTGGTTGATTCGTCGTCATGATGAGACCTGAATTCATCT TCATCTTTGTTGACAAGGTGTATTTGGCAGTAAATAATTCTGACTGTATATAATATTTTGTTTCCTATCTTGTTTGGTCTATTTTAAGTAGTTTGTTATT GTAATTTATTCTCTCCTTAACTTAGAATTTCCTTCCTTGATTCTTGTCAATCACATATTGTATTTTTCTCTATAAAAAGAAGGAATCCCTGTACAGTTTA AGATCATAAATAATATTCCAAATATTTGAATTTGACATCAGAGCAAAGATCACTGCGCCTCTGATTTGCGGTAATGGCTGACAGTTCCTCAACCACCAAA GACTCGCAGCCTCCAAGACATGAGCAAAGAGTTTTTTTCGGTGAATCCCATTCTGTCCAAATCACCACCTTTCGACTCAATGGGTCGAACTATTTCCGGT GGTACCAATCTGTCCAGATGTATATGCGTGGCAGAGGAAAACTTGGATACCTCACTGGTGAGCGACCCAAACCAGACACCGATGACCCACATTATGCTGT TTGGGATGCTGAAAACTCCATGGTGATGACGTGGCTGATAAACTCCATGGAGGAGGACATTAGCAGCAATTACATGGGTTATTCCACAGCCAAAGAGCTA TGGGATAGTGTCATGGAAATGTATTATGATCTTAAAAATAAATCTCAGATTTATGAACTCACCTTGCTAGCCAGAGAAATTCGGCAGGGAGGTCATAACG TGACGAAGTATTTCCACTCTTTGAAACGGGTATGGCAGGACCTTGATCTCTTCAACGCTTATAAGTGGAATTCAGCAGAGGATGCCAAACACCATCACCA GACAGCGGAAGAAGGTAGAATATTTCAATTTCTTGCAGGTCTAAATGAGGAGCTAGATGATGTTCGTGGCAGGGTCATTGGGAGGACAACCTTACCTTCA TTAGGTGAGGTCTTCGCTGAAGTTAGAAGAGAGGAAACCCGTAGAAGTGTGATGATGGGAAAGATCAAATCTGATCCACTTCCTCCTGAGACCAATGCTC TTGTTGTAGAACCTGCTGCCTTTAAGAGTTCAACCAACCAGAAGAACTTATCAAATCTTTGGTGTGACTACTGCATTAAACCACGTCATACCCGAGAGAA TTACTAGAGAATTCATGGCAAACCAGCACATCTAAAGGGCAACAAATCTGGTCCTAAAGTTCACAAGCCCTTCCCTATAACTCATGAGGCAGAAAAGACC TCATTGAGAAAGGAACAAGTTGAGGAACTTATAAGGTTGTTAAACTCTAATTTTTATCTGGTACTCCTAGTGGTTATGTGGCACAAACAGGTAATTTAAG TACCCCTAGCTCCCTCAACTGTACCTCAAATATGTGTGTACCATGGATCATTGATTCAGGTGCTTCGGATCATATGATCTGTCTTTCTTCTTTATTTAAA ACTTATTCTCCTAGTTCTGGAAATGAAAAAATTAGAATTGCAGATAGTAGTTTTCTGTAATTGAAGGGAAAGGGAAAATTACCTTATCTAAAACCATTGA ATTAAAAAATGTTTTACATGTACCCAAACTTTCCTATAATCTTCTCCCAGTTAGCAAAATCTGCTACGATTCCAATTGTAGTGTAAAATTCTTTGACACT CGTTGTGTTTTTCAGGACCAGATTTTGGGGAAGATGATTGGCAGTGCTAAGATGATGGATGAACTTTATTACTTTGAGGATACTTTCGAAAATAAAGAAG CTCAGGGCCTTAGTGGTATGAGTTCCACCCCTGTTAAAGACCGAATAATGCTCTGGCATAACAGACTAGGGCACCCAAATTTTCAATATCTCATGCATTT GTTTCCGGATTTATTCAAAAATATTGATTGTTCTTCTCTTAAATGTGAAAGTTGTGTTCTTGCTAAAAATCAGAGAGCTCCTTATTACTCTCAACCTTAT CATGCATCTAGACCTTTTTATTTAATCCATAGTGATGTTTGGGGTCCTTCAAAAATAACAACTCAATTTGGAAAAAGGTGGTTTGTAACTTTTATTGATG ACCACACCCGGTTATGTTGGATCTACCTTATGCATGATAAATCTGAAGTTCCAAATATTTTTAAAAGTTTTTCACAAATGGTAGAAACTCAATTTGACAC AAAAATCTCCATTTTGAGGAGTGGCAATGGACTTGAATATTTTAATAAGAATCTCAATGAGTTTCTCAAAAATAAAGGCATTCAACATCAATCGACATGT CCAAATACTCCTCAACAAAATGGCATTGCTAAAAGAAAAAATAAACATCTCCTAGAAGTAGCTCGTGCCATTATGTTTGAGAGTAATCTTCCAAAGTATT TTGGGGGGATGCTGTCCTAACAGCAGCCTATCTCATCAACAAAATGCCCACTAGTGTGTTAAATTATCGCACACCTTTGGACACTTTCAAAACCATTTTG CCAACATGTCGATTACATACTGATATGCCTTTAAAAGTGTTTGGTTGTACTGTTGTTATCACTACACCCTCCGCATCTCGGTCTAAACTAGACCCAAGGG CAGAAAAATGCATTTTTGTTGGATATTCTCCAAGCCAAAAAGGATATAGAGTCTTTAATCCGATTATGATGAAGCTTTGTGTTAGCATGGATGTTACCTT CTTAGAACATCAACCTTTTTTTCAAATAAATTCTCTTCAGGGGGAGAATGATATTGTGAGTGAAGACAATTTCTTAATTTTTTTACATTTGCATGAACCA TTGCCCATTCCTATTTTACATACCGAGAATACAGATTTAATTGATAAAACAAGTGTGGAAGAACATGTGGAAACTAGTCCTAAAATTTCTAAAGAAAATC TTATGTCAGACTTAGATGGATCCCGAGCAGGGAAAGAAATACCACAATCAAAAGAGGAGTTTCGTGTTTATACTCGGAAATATCCTAAAAGGATCAAAGA CCAATCCATCATCTCTGCACCAAACCAACCAGCAATCCCGGAAGAAGGCCAAGAAGGAATACCACGAGAAATTCAAGGTAACACTGAAATTCCCACTTCT AATATTGAACTGCCCATAGCTATTAGGAAAGGAACTAGAACCTGCACCCAAAAATTAAAAAAACCTAGCACAAGTCATCCCATTTCCCAATATATTTCCT ACCAAAATCTGTCTCAAAGTCACAAGGCCTTTACCTCAAAAATAACAAACATGTTTGTGCCTAGAAACATTAAGGAGGCATTAGATGATCCTAATTGGAG TTTAGCAGTCTTAGAAGAGTTTCAGCACTAAAAAAGAATGGAACTTGGGAGATTGTTGACCTGCCTCGTGAAAAAAAAACAGGTGGGGTGTAAGTGGGTA TTTACCATTAAGTGCAAGGCTGATGGAAGTATAGAAAGGTACTAGGCTAGATTGGTAGCAAAGAGATTTACTCAAATTTACGGAGTAGACTATCACGAAA CGTTTGCTCCAGTCGCTAAACTTAATTCTGTTCGGATTCTTCTATCTCTTGCTACGAATTTTAATTGGCCTTTACATCAATTGGATGTAAAAAATGCTTT CTTCAATGGGAAACTAGAGGAATAAGTGTTTGAGTCTTCCCCCCGGATTTGAAGAAGAACTTGGAAGAAATAAGGTGTGTAAACTAAAGAAATCATTATA TGGGCTGAAGCAATCTCCAAGGACAAAGTTTGAGAGGTTTGGAACAGTGGTAAAAAGACTTGGATATATCCAAAGCCAAGCTGATCACACATTGTTTTAT AAACATTCAGCAAATAATAAGATTGCTATCTTGATTGTATATGTTGATGATATTATTTTGACAGGAGATGATAGCTTGGAACTCAAAAGTTTGAGGGAAA AACTTGCTAAAGTTTTTGAAATCAAGGAACTTGGTCCATTGAAATACTTTCTTGGAATTGAATTTTCAAGATCAAAAGAAGGTATCTTTATGAACCAACG AAAATATATTCTAGATCTTTTAAAAGAAACAGGATTACCTGGATGCAAAGCTGCAGAAACACCTATGGAACCTAACTTAAAGCTGCAACAAGCTGAAACA GAAAATCTGGTGGACAAAGGAACGTATCAGCGACTAGTGGGAAGGCTAATATACCTACCTCACACTCTTCCAGACATAGCATTTGCTGTAAGCATGGTAA GCCAGTTTATGCATGCACCAGGTCATGAACACTTAGAGGCAGTTTTTAGGATCCTAAGATACTTGAAGGGATCACCTGGAAAGGGACTACTTTATAAAAA CCATGACACTTTTAGGTAGAAGCCTACACTGATGCAGATTGGGTTGGGAGTGTGACAGACCGAAGATCAACATCAGGCTATTGCACTTTTGTTGGAGGAA ACTTGGTTAGTTGGAGAAGCAAAAAAACAGAACGTGGTAGCAAGGAGTAGTGCAGAAGCTGGATTTAGAGCAGTTGCTCATGGAATTTGTGAGGCAATAT GGGTGGAAAAACTGTTAAAGGAATTAAAGGTTTACAATTCTCCTCCAATAAAGCTATATTGTGATAACAAGTCTGCAATATCTATTGCACGCAACCCAGT CCTACATGACAGGACCAAGCATATAGAAGTTGATAAACACTTCATCAAGGAGAAGATAGAAAGGGGGCAGATATGTATTACATATGTTCCCACTGCAGAA CAATTAGCAGACGTCCTAACTAAAGGATTACCCAAGAAATCCT BLAST |
| Tissue | pods |
| Gene name | LI_gene_167143; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_292782
| Blastp | - |
|---|---|
| Blastx | Copia protein from Sophophora with 31.28% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_017415203.1) |
| Pfam | gag-polypeptide of LTR copia-type (PF14244.5) |
| Rfam | - |
| GO | - |