| Id Trinity | TRINITY_DN49178_c3_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_292996 |
| Sequence | TAATAATGTACAAATGTGATAGAACTTAGTACATATGTTTTATTTTTCTTAATACAATACAATTGACTGTTCCCGTTTTTTAATTTTTCAAAAAAGTTAT TTACAGGGAGTGATCGTTCGTTTCCAAGGAAAAATATTGCAGTGCTGAATCAAATTCCCGCCAAGGCGAAAAAGCGAGTTGGAAGAAGAATGGCCGAGAA GGAAATCCAAGTTCGAGCCCTAACCGGTGACTCCATCATTCTTCACATCGCTCCCACCGCAACCGTCCACGATCTTAAACTTCTTCTCATCGACTCTTTT CCACCTGCCACCAACTCCCCCAACTTCCACCTCTTCTCTAAGGGAGACAAATTAAGATTGCAGGCTCAGATTGGTTCTTATCCCATCGAATGCGGCGAGT TTTTTGTTCTGGTTCCCTTTACTAAGAAGGAATCAACTCAGGCGAACAAGCCGGACCCACTTCAGGCTTCTGTAACTCCCTCGAATGCAACCTCTAATCT TGCTGAATCTACATGGTGCAATATAATGGAGGATTTGTCAAATTTACGTGGGACGACTGATAGTGGTACCTCCAATGCTAATGACACTGACAAGGCATCT AATTTTGAGTATTCTGAACCGAGAAAAGAGAAAATGGTGGTGGAGGATACTTGTTCCGATTTTTTTGACCCGAAAACTAAACGAGGTTTTGGTCCTGATA AGCAAATGGAGCTTCCGTATCATCTCATATTAAACACGCTGCAATATACTAGTGAGGGCATTCTTGGCGAGCATAATTGTGAGGTTTTCTCGAAGGTTTT GGAGTCTGTAAATTGTTTATCAGATCTTCCTATTGGATACTGCAAGTTATTTAAAAGAGCCCGTTTGAAGGGGGGCAGTGGCTTGGGACTGTGTTCTAAT AATGTTGGTAGTACATGCTTGTGTCCTGCATGGTTGAAGATAGTAATGAAGGCATTTGCTTTCATAAACATTTTTTCCGCGTTTCTTCATTTGCAGTGTA GGAAAATAACCGATTGTCTGCTGGAAGAAGCGCTGAATCAGGTTGGAAAGTTTGGAGTCAAACTTGAACTCCAGGACATGGAAAAACTTTCTGTTCTTTG TCCACAGTTAGTATGTTTTGGAGATGACATTGAGAATACAGGATTTGGTGATGTCATTGTTGTGGTAAACCATTCAACAAGCAATAAAGATCAGATTGAA AATAATCCTAAAAGAGCTCGCAAGTGGTTGTATATTTCAAAAATTGTCAGTACATTGAAGAAACGGGATAGCTCTTTCCGAAATAATCTGTGGGTGGCTT TTGAGCAGCTGCCGATTGTCTTAGATGAGGTGGCTGTGGGAATTTCCTTAGAAGAATTGCTTGCAGCAATGAAGGACCATGATTTTGTTGGAAAAGCAAA CAAAGCAAAACGTGTAAAGAGAAGCTCTACTACCTCAAAACCTGCTCTGGATCACCTTGGGTGTCATGACACAAAGCCATTGCTGGTTATGGACATGGTT GATCATCTTAAGAATGGAATTGGCTCTAACGGACAGATTGTGCATGTTGAAGATATATGTGCAAGAATAGCGATTCACACAGAGATGTCAATTGAACTAT CAGAACAAATGAGAACTGCACTGGAGTGTATTGGAGTTTCCAAATTGTATAGTCACCAGGCAGAGTCTATACAAGCCTCGCTTAATGAGAAGAATGTTGT TGTGGCTACAATGACATCTAGTGGCAAATCTCTATGCTATAACCTACCAGTTCTAGAAGTGTTGTGCAAGAGTTCATCATCTTGTGCTTTGTACATATTT CCCACAAAGGCATTAGCTCAAGATCAACTAAGATCTTTGTTACACATGACAAAAGGATTTGACGTTGACTTCAATATTGGTATATATGATGGTGACACTT CTCAAAGTGAGAGGACATGGCTACGTGAAAATTCTAGATTGTTGATCACGAACCCAGATATGTTGCACATATCAATCTTGCCTCACCATCAGCGATTTAG CCGGATTTTATCAAATCTACGGTATTTATATTGAATATTAAATAAACTGTATTGATCTGAACTATTAGGTATTTATATGGAATATTACTTGGATTGTTAT TGTGGAGAGTTTTACTCTGTCTCAATTCATTAGGTTTGTAGTAATTGATGAAAGTCATACTTACAAGGGAGCATTTGGATGTCATACTGCCCTTATATTA AGGAGGCTCAGGCGACTCTGCTTACATGTATATGGAACTGTTTCTTCTTTCGTTTTTTCTACTGCAACTTCTGCAAATCCTCGTGAGCATTCTATGGAAC TTGCAAATTTACCAACAGTGGAGCTATTTCAGAACGATGGAAGTCCATCTTCAAGGAAACTTTTCATCCTTTGGAATCCTGTTCCACGTCTAAAAGCTAT CTTGAATAAAGCTCAGTTTGCTATGGGTACTGACGAGCTAGCTGATGAAATTTCTAATTGTGTCCGTTCAAGCCCAATCGTGGATGTTTCACGACTTTTT GCAGAAATGGTCAAGCATGGTCTTCGCTGCATTGCATTTTGTAAATCACGGAAACTTTGTGAGCTCGTTTTATCCTATACACGTGAGATTCTTCATGAGA CAGCCCCGCATCTGATGGATTCCATATGTGCATATCGTGGTGGCTACATTGCAGAGGAAAGAAGGAAAATAGAGAGTGCATTTTTTGGTGGCAAAATTTG TGGTGTTGCTGCAACTAATGCTCTTGAGTTGGGCATTGATGTTGGAGAGATTGACGTGACTCTCCATCTAGGATTTCCTGGAAGTATTGCAAGCTTGTGG CAACAAGCTGGTAGGGGTGGGAGAAGAGATAGACCATCTCTTGCTGTATATGTTGCATTTGGTGGGCCTCTTGATCAATACTTTATGAACCACCCAAAGA AACTATTTGAAAGTCCAATAGAATGCTGTCATATTGATTCTCAAAACAAGCAGGTTCTTGAACAGCATTTGGTCTGTGCAGCTTATGAACACCCTCTCTG TGTGCAGTATGATAAGCAGTATTTTGGTTCTTGCTTAGAAAGTGTTTTGATTTCTCTAAAGGCTAGAGGATTCTTGAGTTCTGATCTTTCATCAGATTCT TCTTCTAGAATCTGGAACTACATTGGTCCCGAGAAATTACCCTCGCATTCAGTCAAGATCCGAGCTATAGAAGCTGTAAGATATAGTGTCATCGATCAGG AAGAAAATGAAGTCCTTGAAGAGATAGAGGAAAGCAAGGCTTTCTTCCAGGTATATGAAGGTGCAGTGTACATGTGCCAGGGGAAAACCTATTTGGTTGA AAAATTAGATCTATCTAGCAAAATTGCTTTCTGCAAAAAGGCTGATGTGAAGTATTATACAAAGACTCGAGATTACACTGATATTCATGTCATCGGGGGT AATATTGCTTATCCAGCAATGGTGTCCAACATATCTCCAGAAACAAATGCCCGAGCTCATGCATGCAAAGTAACAACTACTTGGTTTGGTTTTTGTCGTA TTTGGAGAGGAAGCAATCAAATCTTTGAGACTGTTGACCTATCACTTCCTCAATATTCATACGAGTCGCAGGCAGCTTGGGTTTCGGTGCCACATTCGAT AAAAGAAGCAGTAATCAAGCAGAATTATGATTTCCGTGGAGGTTTGCATGCTGCTTCACATGCTGTTTTGAATGTAGTTCCCTTACATATAACATGCAAC TTGTCTGACTTGGCTTCTGAGTGTCCTGATCCTCGTGATAATCGATACTATCCTGAAAGAATTCTAATATATGATCAACATCCTGGAGGGTGTGGAATTT CAGTACAGGCTCAATCCTGTTTCACAAAGATCTTGACAGCTGCACTTGAGCTTCTCACATGTTGCTGCTGCTCAGCTGAAGTAGGTTGTCCTCATTGTGT TCAGGATCCTTAGTTGAATCATAAGTGGACGACTACAACATGAAAAGGACAAGAGCGTTTGACTCAAGGAATTAAGACAAGGATGCATGAGTTAAGACAG GAGTGCATGAATCAAGGAGATGAGACGTTGAATAGTTTTCCTTAATCCAGAGTTACAAAGTAGGAAGATTTTCCTCCTTAAAGATAATTCCAAGGCCAAT TCCATTTGACACGTTCAAAGGAGGATTATTTATCAAGGATAAAGGAAGATAATGCATGGCTGGTTTCAAGGGAGACTGAGAAGACTTCTTCCAAGGTATG ATTTAAAGATAAAGAGAGGATTTACACGGCTAGAAAGGAGGAAATTCAGCAAGGTCTTTCCTTTATTTTCTACTTGAAGATAATGTGGAATTTTAGTTGA TTAAGTCTTCACAAATCTGGCCAAATTTCAAAAGGGAAAGCATAAAGATAATATGGATTTCCATTTAGTCAAAAAGAAGGAAATAATTAAGTCTCCATTT AGAATTCAAACCTCCTTGACTCAAGGAGCTTTCCATGGACCAAACTGTGTGGAGTTTTCTACTTGAAGATTAGTTTAATTAAAGTTTTAAAATCAGCCAA CAACTCAAAGACTTAGTCAACTATCTTTTGTTCAACAAATCAACCAAGTTAAATTCAAGTCCTTAAAATAGGATCCAGCCATGGAGGATTTAACTACTTC ATATTCAAATCAAAGGGTGTGTGATCTATGCAAGCCAAAGCTAACTAATTTGGTTGCACCCTCTACATGAATTTAATTTAGGATTTTCGTTTTATCATTT TAAATTAATTAGGAAATTAGTTTATTTTCATTTTAGACTTAACCAAATTTATTTTTCAGCATATGGCAAACCTTTTGCCTATTTATTGTATTCAGAATTC ATTAATGAAAGTTAAGTTTGAATTTGAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_167165; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_292996
| Blastp | ATP-dependent helicase hrq1 from Schizosaccharomyces with 30.5% of identity |
|---|---|
| Blastx | ATP-dependent helicase HRQ1 from Saccharomyces with 32.35% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (SPAC23A1.19c) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019415503.1) |
| Pfam | Helicase conserved C-terminal domain (PF00271.30) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |