Ll_transcript_467038

• Id Trinity: TRINITY_DN49210_c0_g1_i4
• Name Transcript: Ll_transcript_467038
• Sequence: CTTGAGCAAACAACAGAAGATAGGGACAAAGAGATAAGGATTTAAAGCCTTGCCATTCATTTCCCTCCCTCTATCTTCATGACCCATTTCCTTTTTTCCC ATAAACACTTCATTTTTACAATTTTACCGAACTTCTAAGACCAAACTGTTCCTCTCATTTTTTTTGGTCTTTTGAACCTTCTGAGATGAGCCGTTCTGAT ATATAACCGAGTTTCACAATTCAAGCTAACATGAACCCTGTAATTCCATGTTCTGTCAGCAATGTTTCACTTATTCCTGGTGTCGCCTTTCCAACAAGGA CGAATAATTCTTTAACAACACTCAGTTTGTCAAAGAGCTCTGTAAAGTCTGTATCATCAACTCGGAGATGTCTCTTACCTTCGTTTGTTGCCAATGGAGT GTTTCCAAAGAACAAAAGGAGATTCTCTTTTCATAAAAAATCTCGGACCAGCATATCAGCCACCACAGAAACTGAAGTAGCAGTAGAGGAACCAGGTTCC ACTGTTGCAGGCGAAGTTTCTGGCGAAACTCCTTCAGATGATGTTGGAACAAGTGAGGATTCATCTCCGAAGTCTGATGCCAAATCTGATCCAGCTAAAG CCAACCGTTCAAGACCTGCAAGTGCAAGGAGAAGTGACTTGCCTCCTGTAAAGAATGAGGATTTGATTCCTGGGGCAACTTTTACCGGCAAAGTTAAATC TATCCAACCATTTGGTGCCTTCATTGATTTTGGAGCTTTCACAGATGGGCTTGTTCACGTTTCAATGTTGAGTGATGACTATGTTAAGGATGTTTCAAAG GTTGTTTCTGTCGGACAAGAAGTGAAGGTGAAGCTGATTGAAGTGAACACTGAAACTCGGCGTATTTCTCTCTCTATGCGTGAAAATGCAGAAACTGGTA AGCAACGTAAAGAGGCACCCACCGATGGAGAGAAAGGTGGACCTGGCAAGAGGAACACTTCAAAACTAGGTCCAAGGAAAGATAGTGGGAGGAAAAACTC AAAATTTGTCATAGGGCAGGACCTGCAAGGTACAGTGAAGAATTTGGCTAGGAGTGGTGCTTTTATATCTCTTCCTGATGGGGAGGAAGGATTTCTGCCG ATATCCGAGGAACCTGATGATGGATTTGGAAATGTTATGGGAAACACTTCGCTGGAGGTCGGTCAAGAAATCAATGTGCGTGTTTTGCGTGTCTCAAGAG GGCAAGCAACTTTGACTATGAAGAAAGCAGAAGATGTTGCAAAAGTAGACACCGTACTTGGCGAAGGCGTTGTCCATGTTGCAACAAACCCTTTTTTATT GGCTTTCCGTAAGAGTAAGGATATTGCTCAATTTTTGGATGAGAGGGAGAAAACTCAGAGTGAAGTTGAAAAATCATCAACTATAGGAACTTCTGAAGAA ATTAGGGGAACTGCCAAGGAAGCGAAAACTGTTTCGGAAGTTCTTGATGTGAAAGATGAACCAGAAAGCCTCGAGACATTGGTAGATGATACTCCTTCAG TGAAACATACTGCTGAATATGATATTTCAAAGGAAGATGCCATACCCAATGCATTTGATAGTTCCTCAATAGCTGTTGTTGATGATGAAAGAAACCAAGT TGACAATGTCTCAAGCACAACGCCGGATATAGATGGTGCTGCAACGCCGGATATAGATGGTGCCACGGAGAATGGAACAACAGATGTGCCTTCTGGAAGT TTGGCTTCTGAAGGGGATCTATCTACTGTATAGCCAGTCCTTGAGGAAGCTACATAGACAAATGTCACAAGCAATGTAGAAACTGACTCATCTCTTGAAA TAGCTAATGAAAATGCAATCCAAACTGGAATTGATCCTATCATGGTGGAAAATGAAAAACATTCACAAACATCTAATGCAAAGGAAGAACTTGTGGCCGC AGCGATAACCGATAGTGATGCGGTCGAACCCAGCCCTGATAATTAGACTAAAATTAGGCCTTTAGCTTAAAAAAAGTATGATTTCCAAATCATGATTCTG TGTTTTGATACATGTTCATTCTCAGTTGAAGTGATTTGTCCTGTAATTCCATCAATTGAGGAGAGCTCAATGGATATTGTGCACAATAAAATTTAGAACT TCCCTTCACAATTATTATTATTGTCATGATCACACGGTCAAGCAATACCCATGCTTCATATATTC
• Tissue: pods
• Gene name: LI_gene_167424;
• Additional information: details;

Expression of Ll_transcript_467038

FPKM

• PAB: 0.8
• PNAB: 16.1
• PS1: 6
• PS2: 2.9
• PS3: 3.5
• PW1: 9.5
• PW2: 7.7
• PW3: 5.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_467038

• Blastp: 30S ribosomal protein S1 homolog from Bacillus with 34.87% of identity
• Blastx: 30S ribosomal protein S1 homolog from Bacillus with 34.87% of identity
• Eggnog: thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (By similarity)(COG0539)
• Kegg: Link to kegg annotations (BSU22880)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019457841.1)
• Pfam: S1 RNA binding domain (PF00575.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;