Ll_transcript_466793

• Id Trinity: TRINITY_DN49217_c3_g2_i5
• Name Transcript: Ll_transcript_466793
• Sequence: CCAGAACAGAGCTTGCATAGTTCTCCTGCTAGAGAAGAGGGTGAAGTACCTGAATCAGAATTAGACCCAGACACAAGGCGCAGGCTTCTCATATTGCAGC ATGGACAAGATATTAGGGAGAACACATCAAGTGAACCTCCATTTCCTGTCAGACTTCCCGTACAAGTTTCACCTCCACATATCCCATCACATGCGGGATG GTTTCCTGTAAAAGAGGAAAGGGGTCCACAGCAACTAAATCGGGTAGCACCGAAAGAATTCCCTGTGGAGTCTGAACCGTTGCATATTGAGAAGAAGTGG CCTCGCCATCCATCCTTTTTCTCCAATGTTGACAATCCTATGTCATCTGATAGAATTCTCCATGAGAACCACCAAAGATTGCCAAAGGAGGTTTATCAAA GGGATGATCGCTCGAGATTAAACCATACACACTCTAGCTATCATTCTTTCGCCGGTGATGACATTCCCTTGGGTAGCACTTCTTCCAGCAACTGGGATCT TGACTCTGAATCTGGACATCCTTTATTTTATGCAGATTCTCCAGCTGGCGTATTACGTGAAATTGCACTGAAGTGTGGAACTAGGGTGGAGTTCTTGTCA TCTTTAGTTGCTAGCACGGAACTGCAATTCTCTATCGAGGCATGGTTTGCGGGAAAGAAAATTGGGGAAGGAATTGGTAGAACAAGAAAGGAAGCCCAAT ATAAGGCTGCCGAGGATTCTATTAAACAATTAGCTGATATATATATGTCCCATACAAAGGCTGATTCTGGTTCCACTTATGGTGATGCAACTGCGTTTCC TGGTGTGGAGGACAATGGTTTTATGAGTGGTGTTAATTCTCTTGGTAATCAGCTATTGCCTAAAGAAGAGTTGGACTCATTTTCAACTGCATCGGATCCA TTAAGGGGGCTAGATCCTAGATTTGAAGTCAAGAGGTCAATGGGTTCAATTTCTGCCCTCAAAGAATTGTGCATGATGGAGGGTCTAGGTGTCAGTTTTC ACTCTCCACCTGCTCCTGTGTCAACAAATTTTGTACAGAAAGATGAAGTACATGCACAGGTCGAAATAGATGGTCATGTGTTTGGTAAAGGGATTGGGTT AACATGGAATGAGGCTAAAACGCAGGCTGCCGATAAAGCACTTGGAAGTCTAAGGACAATGCTTGGTGAAGGCACTCAGAAGCGGCAGGGTTCTCCTCTC AGGTCATGGCGAGGATTTTCGAATAAACGAATGAAGCAAGAATATCCCCGAACTCCGCAGCGGATTCCTTCGTCTGCCAGATATCCCAGGAATGCTCCTC CAGTCCCTTGAAAGAGTAACAGCTTTTCATCTCACTTTATCAGCATGCCTTATGTTGGGAGAGTATGCATTTGTTACAGAAGCAAGAATTTGGAGAATAC TTGATGGATGAATGATGCTCGACCTCTCAGTCTTTTTTATTACCAAATCCAATGCCAAGCAGAACCTCCACTTTTCTGCATCAACTTAACATCCTCACTC AAGTTGTTGAGATACCTGGACCAAGATTTTGTAACATAGTCATACCTTGGTCCTCTCAGGCAATAATGCAGTGCTTTGAGGTTGGTTCAAAAGATGTTGT GCTGTCCACATGCTGTACTTGTATTTATGTGGCTTGTAATCTCTTTGTGCCAGTGTTACCCCAAGAGAGGTGCATTTGATTCATCATTAATTTTATTTGT CATCTGAAGTTATGATACACACCATTTAGTACAGGCCTTTTCACTGGTTTTTCACTAACCTTACACTAGTCATTTCATGATGCCACTCACAAATTATATA GCCCTACACAACCTTCTGGAGGCGCTGTTATGACCCCTAGTTTTAAGTATTATGCCCATTAGGTGAGAGTCTCATGCAATAGATCGTTTTGTTTTTAGTC TCATTAGGTGAGAGTTTCGTGCAATAGATCGTTTTGTTTCTAGTATTTTGGTGAGATTTTTACTTTTTCTTAGCAGACATCATTTTCATAGTTATATCAT GTGTGCTTGTAAACTGAAATTTGACGCAAATAGCTAATAAACTTTGTTGTGCTAAATATACAAAATTGGATGGTTGGAAATGAAGAGTTCATAAGGATAG AGATAAGTTTGTCCAAA
• Tissue: pods
• Gene name: LI_gene_167454;
• Additional information: details;

Expression of Ll_transcript_466793

FPKM

• PAB: 5.5
• PNAB: 8.3
• PS1: 9.6
• PS2: 3.6
• PS3: 7
• PW1: 7.9
• PW2: 7
• PW3: 5.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_466793

• Blastp: RNA polymerase II C-terminal domain phosphatase-like 1 from Arabidopsis with 52.8% of identity
• Blastx: RNA polymerase II C-terminal domain phosphatase-like 1 from Arabidopsis with 52.8% of identity
• Eggnog: CTD (Carboxy-terminal domain, RNA polymerase II, polypeptide A)(COG5190)
• Kegg: Link to kegg annotations (AT4G21670)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019425587.1)
• Pfam: Double-stranded RNA binding motif (PF00035.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;