| Id Trinity | TRINITY_DN49266_c3_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_466486 |
| Sequence | ATAATCTACACTTTGTTAACTGTCATTTGTGTTTATTCTACAGTTGCTAATAAAATAAGCTATTGGTTTCATACCCTTAAAAGCTAGTATTGTTTATAAA GCACCCGAGGCAGGGGAAACAGTGCCATCATTCTGAAGAAAAGAGAGTTGACAAGGTAGAACAGAAGAGTATCTTTGTTTGTAGTGCAGCAATGGCAACA CCAAAAGAGTCATATGAGAATCAACAACTAGCGATTGTGCAACACGTGAGGAACTCGGGGATGATTAGTTCCAACCCGAGCCCATTAATGGATGATAAGG AAGAGGAGATGTCAAGATCAGCTCTTGCAATGTTCCGCGCAAAGGAAGAAGAATTCGAGAGGAAGAAAATGGAAGTGAGGGGTAAGGTCCATGCTTATCT CGGTCGAGTGGAGGAGGAAACTAAGCGCTTGGCTGAGATTAGAGAAGAGCTTGAGGGTCTCATAGATCCATTGAGGAAAGAAGTTGGAATAGTTCGAAAG AAGATAGACAATGTTAACAAAGAGTTAAAGCCAATGGGCCAAACATGCCAAAGAAAGGAGAGGGAATACAAGGAAGCCCTTGAAGCTCTCAACCATAAAA ACAGGGAAAAAGGTCAACTTGTTACAAATCTAATGGAGATGGTGAACGAAAGTGAGAAGCTGAGGATGAAGAAACTGGAGGAACTAAGCAAAAACTTAGA CACTCTGAAATGAGATGCTAATAAAAAAACTCACCCTGGCACAGGAGAGAGAGAAAAAAGAGATTAGCAGCGTGTGAAAGCGTGGATGAAAATGTTAGGT ATGGACGAGCGCACTGTAACATCAAACCCTAACGACAATGGCGAAGGAAAAATGAAGAAGAAACCGAAGGTGGTTGTCATCACCGGACCCACCGCTTCCG GAAAATCCAAACTCGCCGTCGATTTAGCTTCCCTCTTCCCAATCGAAGTTATCAACGCTGATTCCATGCAAGTCTACCGTGGTCTCGATGTTCTCACCAA CAAAATCCCCTTCTCACAACAAAACGGTGTGCCTCACCATTTGTTGGGTTCTATAAGTCCAAACGTAGAATTCACTGCTAAAGCGTTTCGAGATTCTGCT ATTCCTATCATTGATGATATATTGGATCGCAATCATTTGCCTGTTATTGTTGGAGGTACAAACTACTATATCCAGGCTCTTGTGAGTCCATTTCTTCTAG ATGATTTGGCAGAAGATATGAATGAAAGCTGTTTGGACGACTTGCCTGGTACCACACAGTGTGATATCAGTTTCATTGCTGAAAATGACTCTTTAAATGA TAGTTACGATCTACTTAAAGATATTGATCCAGTTGCAGCAAATAGAATCCACCCAAATAACCATAGAAAGATAAACCAATATATTAGCTTGTATGCTCGT ACTGGTGTTCTTCCTAGCAAAGTTTTTCAAGGAAAGGCAGCAGAGGGCAGAATTGGGGTCAAGTTGATAACTTAAGATATGATTGCTGTTTCATATGTGT GGACGCATCTCTCCCTGTACTCGACAAATATGTTGAGCAGAGAGTAGATTGCATGATGGATGCTGGATTACTGAATGAAGTCTATGCCATCTACAATTTG GAAGCAGATTATACTAGAGGTTTGCGGCAGGCCATTGGTGTCCGTGAATTTGAGCCCCTTCTTAAAACTTGTGTTGTTGAAGACATTTACAAAAAAGAGA AGGAATTGACTGGGTCCAGCACAGAAAAGGGTGAGACATTGCTTGATAGTAATCTGAGGGAGTGGTTGATATCTTCCTCTGATAGTAAATCCATAATTCT TTTGGAAGAAGCAATTGAAAAAGTAAAAGTTAATACCCGAAGACTTGTCCGTCGTCAGGTAAAAATTAATTTCTATTTTTGTGTATGATTTTCTCATACA AGCATTACAACAACAACCAAGACTTAGTCACACTTAGCAGCATCGGCTACATGAATCAAACGATGCCAATATGCCATAATGCTCTCTTGACAAAACATTG ATTTCCAAATCTTTCTTAATCTTTTGCCTATGGTTTTTCTTGGTCTCTCTGTCTCTAGAGATTGGATAACCTCCATTTGATTTTCTCTTCTTACTAGGGC TTCTACCGGTCTCCTTCACACATTCAAATTAAATTTTGATGTCTCTTCTATAATGTAGCATATTGTGGTTAAGAGATCATCTTAATGAAGAGAAGAGAAT ATAATATAGCTGATTAAATGAGATGACAGTTTCTAAACCCTTTTACATAGAGTTGACTTGAATTAGAATAGAAATATGTAAGTCTGAGATTGATATGAAA GCTTTCTTCATGACAGAAAAGGATGCTCAACCGACTGCAAACACTGTTTGGTTGGAACATACACTATGTTGATTCAACGGAATCAATATCAAGTATGCTG CCTTAATTTAGTTCCTGTATTATTTTTACTTTATTGTCATCAAATGATTTTTGAAGTATCCTTCATTACATGGATGTGGTTATTTTGTGTTTTAGGAAAA TCAGAAGAGGTATGGGCTGGCCAAGTGGTTGAGTCTGCCATGAAGATAATTAGATCATTCCTGAGTGAGAATGAAAGCTTGACATCCACCGTTGAGTTGT CTAATATGACTGGGATGAAAATAATCCAGAGGGACCTCTGGACTCGATATATATGCAATGTATGTTTTAGAATGGGACTTTAGCTGCTTTCTTATGACAA GAATAACATCTTCATTGTTTTGCTTACTGACCACCCTTCAATCACATCTTTTTATTGGGATAGAGGAAACAGAGTGATTCTCATGGCCAGTTCTAGCTCT AGGTTTCGTTGCATTGCTTTTGATTTAATGCCTTGATGCAAATCTGGGCCACAGATTGCAAACATCTCACCATATTCTGTTTTTTATGAGCTTCCTTCCT ATTGACAGGCCTGTGGAGATCGGGTGCTTAGAGGATCACATGAATGGGAGCAACACAAACAAGGTCGTGGGCACCGAAAACGTGTTTCTAGTCTCAACAG GAAGGCACGGGGTCTTACTTTCGTGGAACAAAAGCTGGAGTATTCCGAGTGCAACTAGCTTGAATATATCTTCTAAATTTGCAGTTGACTCTGCTTAGCT GTTAGCATGAAGAAGATCAACCGCTGCAGTTTATGTCATTGACACCATACAATTCCATGTCGTGTCACATGAGTAATTTTCTTTTTAAATTCTTGTGGCG TAACATTCAAGTTTTTAATTCCTATTATATTTAAGGGTCATATGTTAACCTGCTGAGGATAAGGAGTGAAATTAAGGTATAGGTAAGGGTCATATGTTAA ACTAAATTCATTAGTACTTGTAGGAATAAATTCTTTATTTTTTCAATATAAAGTTATGCTCATTTATGCTTAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_167859; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_466486
| Blastp | RAB6-interacting golgin from Rattus with 32.79% of identity |
|---|---|
| Blastx | tRNA dimethylallyltransferase 2 from Arabidopsis with 61.9% of identity |
| Eggnog | Golgin, RAB6-interacting(ENOG4111VTM) |
| Kegg | Link to kegg annotations (304923) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019448813.1) |
| Pfam | Transcriptional activator (PF04949.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |