| Id Trinity | TRINITY_DN49315_c0_g1_i17 |
|---|---|
| Name Transcript | Ll_transcript_485096 |
| Sequence | CTCTTCTTCATTTGACACTAACATCAAAGTGTGTGTGATGTTAGACATCAACCTTTTCAGAGAAGAAAAGGGTCACGACCCTGAAATCATTCGCAATTCC CAACGCACTCGTTTTTCTACTGTCCAAGTAGTCGATGATGTTATCAATCTCGACAAACAATGGCGAACACGTACTATCCCCTCTTTCCGACTAGTGCGAT TAAGACTTGATTGTTGTCCTTGTAACTTTTGTCGTATTTATTTCAGGTCAATTTGAGCTTGAGAATCTTAAAAGAGACTTCAACAAGATCAATAAGGAAA TCTCCAAACTCAAGCGTGTCAGCATTTCTATCTCATCATTGTACTTGTAAAGATTGTAACTTTATTTCAATTTATATGAACCCATGTAATTGGGAATCCT CATTTTGTTCAAGTTTGTTTGTTTTTTGAATGTGTGTGTATTTTAGGGTGGTGAAGATGCATCTAAGTTCATTGGTGAATCAGAAGAGACTAAGAAACTT ATAGCACAGAAAGAGGTTGAAGTTAGGGAAACATTCACACTTTTGAATTCCAAATTGGAAACTATTGGAAACCTTGTCCACCATTCTGTTCCAATCAGTG ATGATGAGGCTAACAATAAAGTGGTGAAATCATGGGGGGAGAAAAGAGTGGAACCTAAACTAAAGAATCACGTGGATCTAGTTGAGCTCCTAGGGATTGC AGATACAAAGAAAGGAGCTGATGTAGCTGGAGGTAGAGGTTTCTATCTCAAAGGAGATGGTGTTCGTCTTAACCAGGCTCTAATCAACTTTGGACTTGAT TTTCTGGAGAAAAGGGGATATACTTTACTGCATACTCCTTTCTTCATGAGAAAAGATATAATGTCAAAGTGTGCTCAATTAGCTCAATTCGATGAAGAGC TTTATAAGGTAACTGGTGAAGGGGATGACAAATATCTGATTGCAACAGCAGAGCAGCCCCTTTGTGCATATCATATAGATGATTGGATCCACCCTACCCG GCTACCTATAAGATATGCTGGGTATTCGTCATGCTTTCGTAAAGAAGCTGGATCTCACGGTCGAGATACTCTAGGAATATTCCGTGTTCACCAATTTGAG AAAGTGGAGCAGTTTTGCCTTACTAGCCCAAATGATAATGACTCATGGGATATGCACGAGGAAATGCTGAAGAACTCTGAGGAATTTTACCAAGCATTAA ACATTCCATATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAACGATGCTGCGGCAAAGAAGTATGATCTAGAAGCATGGTTTCCATCTTCTAAAGCTTA CAGAGAGCTAGTGTCCTGTTCAAACTGTACAGACTATCAAGCCAGAAGATTACAAGTTCGATATGGACAGAAGAAGAGCAATGATCAGGTGAAGCAATAT GTTCACATGTTGAACTCGACTTTAACCGCTACTGAGAGAACCATTTGCTGCATACTAGAGAACTACCAGAAGGAGGATGGTGTAGAAATACCAGAAGTCC TCAAACCATTCATGGGTGGAAAGACTTTCCTACCTTTCAAGAACCAACCGGTTAACGAAGCGAAATGGAAGAAATCAAAGGCCTGATTGCTTTATTTTTA GTTGAGTGATATTTGTGAAGAGCCAGTCCAGAAGTTTAGATATTTATCGAAATTTACACGACATGGGAAAAAATCCTTAGTGATATAGACTATACTTTTA ATGACTATTTGGTCTTAAGTGTTGCGAAGGGTTTGTATAGTTGGCATTTTCTGCAATTCACTAATCTACAGCAAGTTTAAGTTTGATACTTGTATATGCA TAATGAGAAATTTGGAATAAGGTTCTTCCAAAGTGAGTTTATCTGGTAAGTGAGCAAGTATTGATCTTTGGATCATTTGGCTGGTTGAAATGTTAGACTT TATTAAATCAATGGTTGATATAACTTTCTCACTTTATGGAGTTGTCAGGCATCATTGAAATGTTTGATAATTCACATTGGAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_168323; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_485096
| Blastp | Serine--tRNA ligase, cytoplasmic from Arabidopsis with 85.43% of identity |
|---|---|
| Blastx | Serine--tRNA ligase from Helianthus with 72.33% of identity |
| Eggnog | Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) (By similarity)(COG0172) |
| Kegg | Link to kegg annotations (AT5G27470) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019452252.1) |
| Pfam | tRNA synthetase class II core domain (G, H, P, S and T) (PF00587.24) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |