Ll_transcript_485103

• Id Trinity: TRINITY_DN49315_c0_g1_i24
• Name Transcript: Ll_transcript_485103
• Sequence: TATCACAACACCAACCATATCCCACTATTAAGAACCACAATCCCACTCTTAAGAACCACAATCCCACCATCAATGACTACACAAATATATTTTATCAAAT AATATTGATCGTTGACTTTAGGAGAAATTGTAGTTCTTAATTTGGAATCTTAAAATTTTTCAGTGATATACGTTCTGCTAGTTTTGAAAATTATCTACAA ACCATTTCATTTCACCGTGAGTCTAACTGTCTAAGACTAAGATCAAAGGTTGTTGACAGTGACTGTGAGTAATGTTGGACATAAACATATTCAGAGAAGA AAAGGGTCACGACCCTGAAACCATTCGCAACTCTCAACGCAGTCGTTTTGCCAGCGTCGAAGTAGTCGATGATGTCATCAATCTCGACAAAGAATGGCGA AAACGTCAATTTGAGATGGAGAATCTTAAAAGAGATTTCAACAAGATCAATAAAGAAATCTCCAAACTCAAACGTGTCAGTGTCCCTCTCTCATTTTCTC TTTTTCTATTTACAAAGATGCAAACTTTACTCAAAATTATATAGACCCAAAAATCGAAATCCTCATTTCATTCATATAATGAGCCAAAGGTATTTTTTGT TCTTTCAAAGAACGTTTTTATATTTAAAAGAATCACTTTTTATGTTTATATGCTTGTTTAGTTGACTTTTTTTCTAAAAACTTTTATACGAAGACTAATT GATATTTAGCATTTGTGAATTTCAGCTTTTAGGAGAAGCTCAAATCACTTATCACAAAAATGATCCTGCTAAAAATATATCTGGGGTTTCACTTTTGTTC TAAATCATAATGAAGGCCCCATTGTTTTTGTAACTGGTTAGTAAAACATTTTGCATGTGCATGTTAGGCTGGTGAAGATGCATCTAAGTTCATTATTGAA TCAGAGGAAACTAAGAAACTGATAGCAGAGAAAGAGGTTGAAGTGAGGGAAACTCTGTCTCTCTTGAATTCCAAATTGGAAACTATTGGGAACCTTGTCC ACCATAGTGTTCCAGTCAGTGATGATGAGGCCAATAATAAAGTGGTTAAATCATGGGGGGAGAAAAGAGTGGAGCCTGAACTAAAGAATCATGTGGATCT AGTTGAGCTCCTAGGGATAGCAGATACCAAGAAAGGAGCTGATATAGCGGGAGGTAGAGGTTTCTATCTCATAGGAGATGGTGTTCGTTTGAATCAGGCT CTAATCAACTTTGGACTTGACTTTTTGGAGAAAAGGGGATATACTTTATTGCATACTCCTTTCTTCATGAGAAAAGATATAATGTCAAAGTGTGCTCAAT TAGCCCAATTCGATGAAGAGCTTTACAAGGTAACGGGTGAAGGGGATGACAAATATCTGATTGCAACTTCAGAGCAGCCACTTTGTGCATATCATTTAGA TGATTGGATCCACCCTACCCAGCTACCCATAAGATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGGTCTCATGGCCGAGATACTCTTGGAATA TTCCGAGTTCACCAATTCGAGAAAGTGGAGCAGTTTTGCCTTACCAGCCCAAATGACAATGACTCATGGGACATGCATGAGGAAATGCTAAAGAACTCTG AGGAATTTTACCAAGCATTAAACATTCCATATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGATGCTGCAGCAAAGAAGTATGATCTAGAAGCATG GTTTCCATCTTCTCAAGCTTACAGAGAGCTAGTGTCTTGCTCAAACTGCACAGACTATCAGGCCAGAAGATTAGAAATTCGATATGGGCAGAAGAAGAGC AATGATCAGACAAAGCAATATGTTCACTTATTGAATTCTACTCTAACGGCTACAGAGAGGACCATTTGCTGCATACTAGAGAACAACCAGAAGGAGGACG GCGTAAAAATACCAGAAGTCCTCATACCATTCATGGGTGGAAAGACTTTCCTACCTTTCAAGAACCAACCAGTTAAAGAAGCCAAAGGGAAGAAATCAAA GACCTGAATGCCTTTTTTTAGTCTGAATTATTGTTATTAAGAGCCGGACCAGGATTATCACCTGTGCTATCTTCCACTGTAGCCTGTTTCTACCCCCTCC CTTCACTTTTTTTTATAGTCAAATGATAATGTCAAGTGTTCTACATATTTGTTGGTAATGGAAACACGTGGTAATTCAAACACTGTATCTTCAATGACTA TATTGTTAAGGTCTTGCAAAAGGTTCCTATTATTTCCATGTTTTCTGCAACTCATTAATGTATAGCATGCTCTGAATTTCTTTGGTACCCTGTTGGATAT GGCACTCAAGGATAAGTTGTCAAACATCTATTGAATGCTATAGCCAATAAAGTATTTGACAATTTACAGTATATATCACTTTTGGAATGAAAAGATAGAT AGCATACCCTGTATTGTAATATGGGCATAAATTGTTTCACAAATTCTGTTAAATATGTGAGTTGGCAGAGTTCAAGTTGTAGGAGTTGTGGGTTGTTGGG TTTAGAATTCTGAAGTTTGTATTGCTTTCCTTCTTGCAGGGCATTGAAACATGTTCAACTTAATCAAGCTCATGGTATACTAAATTCAATTACCAAATTC ATTGGAAAGAAGAATGCAGCTTGGAACTTTGGAACTAGAATATTTAGCCATGTTTTGTAGTAGAGAGTATGCGAGGTCTTACTTTGCAGCCCACCTTGAT TATTACAAATATTCATGATTATGATTATTCTTTATAGCGATTATTTTAAACTAGCTTCAATTTTTTAAAATAATGCCTGTATGTGCTTTATACAATACAT AGCCTGGGTAAAAGGCGAATATTGTGTTGACAGCCGACAATTAATTTAAAATTTTGTCAAATCTCTGATATGGATCAAC
• Tissue: pods
• Gene name: LI_gene_168323;
• Additional information: details;

Expression of Ll_transcript_485103

FPKM

• PAB: 0
• PNAB: 0.4
• PS1: 0.3
• PS2: 0.4
• PS3: 0.5
• PW1: 0.1
• PW2: 0.6
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_485103

• Blastp: Serine--tRNA ligase, cytoplasmic from Arabidopsis with 85.02% of identity
• Blastx: Serine--tRNA ligase, cytoplasmic from Arabidopsis with 77.95% of identity
• Eggnog: Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec) (By similarity)(COG0172)
• Kegg: Link to kegg annotations (AT5G27470)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019441157.1)
• Pfam: tRNA synthetase class II core domain (G, H, P, S and T) (PF00587.24)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;