| Id Trinity | TRINITY_DN49315_c0_g1_i3 |
|---|---|
| Name Transcript | Ll_transcript_485077 |
| Sequence | CTCTTCTTCATTTGACACTAACATCAAAGTGTGTGTGATGTTAGACATCAACCTTTTCAGAGAAGAAAAGGGTCACGACCCTGAAATCATTCGCAATTCC CAACGCACTCGTTTTTCTACTGTCCAAGTAGTCGATGATGTTATCAATCTCGACAAACAATGGCGAACACGTCAATTTGAGCTTGAGAATCTTAAAAGAG ACTTCAACAAGATCAATAAGGAAATCTCCAAACTCAAGCGTGTCAGCATTTCTATCTCATCATTGTACTTGGTGGTGAAGATGCATCTAAGTTCATTGGT GAATCAGAAGAGACTAAGAAACTTATAGCACAGAAAGAGGTTGAAGTTAGGGAAACATTCACACTTTTGAATTCCAAATTGGAAACTATTGGAAACCTTG TCCACCATTCTGTTCCAATCAGTGATGATGAGGCTAACAATAAAGTGGTGAAATCATGGGGGGAGAAAAGAGTGGAACCTAAACTAAAGAATCACGTGGA TCTAGTTGAGCTCCTAGGGATTGCAGATACAAAGAAAGGAGCTGATGTAGCTGGAGGTAGAGGTTTCTATCTCAAAGGAGATGGTGTTCGTCTTAACCAG GCTCTAATCAACTTTGGACTTGATTTTCTGGAGAAAAGGGGATATACTTTACTGCATACTCCTTTCTTCATGAGAAAAGATATAATGTCAAAGTGTGCTC AATTAGCTCAATTCGATGAAGAGCTTTATAAGGTAACTGGTGAAGGGGATGACAAATATCTGATTGCAACAGCAGAGCAGCCCCTTTGTGCATATCATAT AGATGATTGGATCCACCCTACCCGGCTACCTATAAGATATGCTGGGTATTCGTCATGCTTTCGTAAAGAAGCTGGATCTCACGGTCGAGATACTCTAGGA ATATTCCGTGTTCACCAATTTGAGAAAGTGGAGCAGTTTTGCCTTACCAGCCCAAATGACAATGACTCATGGGACATGCATGAGGAAATGCTAAAGAACT CTGAGGAATTTTACCAAGCAGTATGGTGCTTTCCCTCATTCAGCAATTTGAATATCATTTATACCATTCTCTATATTTGTTCAAATTTCAAATGAATATA TAGTTTGTAAACGGCTACTGAATCCTTTAGTAACTTTAAAAAAATTATGGAAACAACAACGCTTGTGATGATTGTCAAATATGTATAACGAGGGGATTGT TTGATGCATCCTTATGTTTCTTTCTAAATCTGCAATATCTAGAAGTGTGGTGTATGCTTGTGATGATTGTCAGTACACTGTATTGGTTATAACTAAGCTC ATAGCTTCGCATTATCTCATTTTTCTTTTTGTTGATGGTATCATTGCATAGAATCATAGATTGATGCATTGGTTGTCTCCAACCTAAATTAACTGTTTTC TTTTCCTCCCTTTCGATTTCCTTTCTAATGGAATTAAATTAACTTTTATGTCTTGTAGTTAAATATTCCATATCAAGTTGTTTCCAATGCATCTGGTGCT TTGAATGATGCTGCAGCAAAGAAGTATGATCTAGAAGCATGGTTTCCATCTTCTCAAGCTTACAGAGAGCTAGTGTCTTGCTCAAACTGCACAGACTATC AGGCCAGAAGATTAGAAATTCGATATGGGCAGAAGAAGAGCAATGATCAGACAAAGCAATATGTTCACTTATTGAATTCTACTCTAACGGCTACAGAGAG GACCATTTGCTGCATACTAGAGAACAACCAGAAGGAGGACGGCGTAAAAATACCAGAAGTCCTCATACCATTCATGGGTGGAAAGACTTTCCTACCTTTC AAGAACCAACCAGTTAAAGAAGCCAAAGGGAAGAAATCAAAGACCTGAATGCCTTTTTTTAGTCTGAATTATTGTTATTAAGAGCCGGACCAGGATTATC ACCTGTGCTATCTTCCACTGTAGCCTGTTTCTACCCCCTCCCTTCACTTTTTTTTATAGTCAAATGATAATGTCAAGTGTTCTACATATTTGTTGGTAAT GGAAACACGTGGTAATTCAAACACTGTATCTTCAATGACTATATTGTTAAGGTCTTGCAAAAGGTTCCTATTATTTCCATGTTTTCTGCAACTCATTAAT GTATAGCATGCTCTGAATTTCTTTGGTACCCTGTTGGATATGGCACTCAAGGATAAGTTGTCAAACATCTATTGAATGCTATAGCCAATAAAGTATTTGA CAATTTACAGTATATATCACTTTTGGAATGAAAAGATAGATAGCATACCCTGTATTGTAATATGGGCATAAATTGTTTCACAAATTCTGTTAAATATGTG AGTTGGCAGAGTTCAAGTTGTAGGAGTTGTGGGTTGTTGGGTTTAGAATTCTGAAGTTTGTATTGCTTTCCTTCTTGCAGGGCATTGAAACATGTTCAAC TTAATCAAGCTCATGGTATACTAAATTCAATTACCAAATTCATTGGAAAGAAGAATGCAGCTTGGAACTTTGGAACTAGAATATTTAGCCATGTTTTGTA GTAGAGAGTATGCGAGGTCTTACTTTGCAGCCCACCTTGATTATTACAAATATTCATGATTATGATTATTCTTTATAGCGATTATTTTAAACTAGCTTCA ATTTTTTAAAATAATGCCTGTATGTGCTTTATACAATACATAGCCTGGGTAAAAGGCGAATATTGTGTTGACAGCCGACAATTAATTTAAAATTTTGTCA AATCTCTGATATGGATCAAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_168323; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_485077
| Blastp | Serine--tRNA ligase from Helianthus with 79.86% of identity |
|---|---|
| Blastx | Serine--tRNA ligase from Helianthus with 75.74% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019452252.1) |
| Pfam | tRNA synthetase class II core domain (G, H, P, S and T) (PF00587.24) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |