Ll_transcript_485085

• Id Trinity: TRINITY_DN49315_c0_g1_i9
• Name Transcript: Ll_transcript_485085
• Sequence: ATTGGATACCCTAGCTAAACCCTAATAGATAAGAGATTTCGAAAAAAGAAGAAGAAAACGGCGTAGAGAGAAAGAGAAAAAGAAGAAGAAATGTTAGACA TCAATCTCTTCAGAGAAGAAAAAGGTCACAACCCTGAACTCATTCGCGAATCTCAACGACGCCGTTTTGCTAGCGTTGATCTCGTTGATGACGTCATCTC CCTCGACAAAGAATGGCGCAAACGTCAATTCGAGTTGGAGACACTACGAAAAGACGTTAATAGGATTAGCAAGGAATTCGCTAAAATCAAGATTGCTGGT GGGGATACAACTAAGCTCAGTAGTGAATCGGAGGAGACTAAGAAACAGATAGCAGCAAAAGAGGTTGAAGTTCGGGACGCTCTCACGCTCTTGAACTCTA AATTAGAAACCATTGGAAACCTTATCCATGATTCCGTTCCTGTTAGCAATGATGAGGCCAACAATGCCGTGATTCGAACTTTTGGAGAAAAAAGAGTTGA GCCTAAACTAAAGAATCATGTAGATCTAGTTGAACTCCTTGGAATAGCAGATTTAAAGAGAGGAGCTGACATAGCTGGAGGCAGAGGTTTCTATCTTAAA GGAGATGGAGTTCGTCTTAATCAAGCTCTAATAAACTTTGGCCTTGATTTCTTGGAGAAAAGGGATTATACTTTATTGCATACTCCTTTCTTCATGAGAA AAGACATCATGTCAAAGTGTGCTCAACTAGCCCAATTTGATGAAGAACTTTACAAGGTAACTGGCGAAGGGGATGACAAATACTTGATTGCAACAGCAGA GCAGCCCCTTTCTGCTTATCATTTAGATGACTGGATCCATCCTACCCAGCTACCCTTGAGATATGCTGGATATTCATCATGCTTTCGTAAAGAAGCTGGG TCTCATGGCCGAGATACTCTTGGAATATTCCGAGTTCACCAATTCGAGAAAGTGGAGCAGTTTTGCCTTACTAGCCCAAATGATAATGCATCATGGGAAA TGCATGAGGAGATGCTAAAAAACTCTGAAGATTTCTACAAAGCACTAAACCTTCCATATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGATGCTGC GGCAAAGAAGTATGATTTGGAAGCATGGTTTCCAGCATCTCAAACTTATCGAGAGCTAGTGTCCTGTTCAAACTGCACAGACTATCAATCCAGAAAATTA GAAACTCGATTCGGGCAGAAGAAGAGCAATGAACAATTGAAGCAATATGTCCATATGTTGAATTCTACTCTCACAGCTACCGAGAGGACCATATGCTGCA TACTAGAGAACTACCAGAAGGAGGATGGTGTAGAGATACCGGAAGTCCTCATTCCATTCATGGGTGGAAAAACTTTCCTACCTTTCAAGACCAAACCAGT TGCTGAAGCCAAAGGGAAGAAATCAAAGGCCTAATTGCATTATATTTAGTCTGAATGATGATATTTATGAAAAGAGTTAGTTCACAATTGAAGGTTAGGT GTGGTCCTCTTGTGTTATTCACCATTATAACCTGTTTCACTTCCTTGTAGAAGTTTTACAAGATGTTTATTACTTGGCATACCCTCTATCTCCTTAATCT ACAAACCTAATATTTTTCATTGCTTCATTGTGTTGATGCATTGTGTTTGATTCAAAAGTTACAATAACCTCCTTAGATGTTTATATGGTAAGGGGTATAT AAGCATAAGTGTAGTGATAAAAATAGGCCTCTAGGGTAAATGTAGTGACAACACGGATCTCGAGAGGACAAGTGTGCAACAGCAACATAAAATTTAGAGA AGTCGCGACAATGTTGTCGAGTATAGTTAAGATGAACTCCTTGTTTGCGATGTTCTAGTTTTTGCTTGAAAAGGACACAAACCTTAATGCTAGGAGATTT TGTGCCATGTTGTGGGATTCTGAAGTTATTGCTTTCTGTGTTTGCAGGGCATTGAAACGTGTTCAATATAATGGAGCTGCATCTACATTGACTTCAATTA CAAACTTTTTTGAAAAGAGGAAAACTTTCTGGAAAATTGGTACCAAATTATTCAATCATGTTTTGTAGTACATTTTGCAGTCAATCTTGTGTTTTGTTCT TAACTGAGGACCACTCAAGTTCATAGGTTTTTAAGCAGCCTTTGTTATGAATTTGTTGTTTTTTCTACCTTTTATTTAAAGAAACTCTAAACAAATGTAT TTGTTTTTAAAATAATGTGTGGTTTCATCTTCTATTAATATCTAGCTTGGTTTATTTTACATATGATTATAGACATTTAGGCAGTGTTTGGTATAAGAAA TAAAAAAATTGGGATGATCTA
• Tissue: pods
• Gene name: LI_gene_168323;
• Additional information: details;

Expression of Ll_transcript_485085

FPKM

• PAB: 0.2
• PNAB: 1.9
• PS1: 1
• PS2: 0.4
• PS3: 2.5
• PW1: 1.1
• PW2: 0.5
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_485085

• Blastp: Serine--tRNA ligase from Helianthus with 81.15% of identity
• Blastx: Serine--tRNA ligase from Helianthus with 81.15% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019419671.1)
• Pfam: Seryl-tRNA synthetase N-terminal domain (PF02403.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;