| Id Trinity | TRINITY_DN49371_c1_g1_i33 |
|---|---|
| Name Transcript | Ll_transcript_484980 |
| Sequence | CAAACTCAACCTAAAAAATAACATGTAACGAACTCGAGTTAAGTTTCGAGTCAAACTAATCTTTATCGAGCTAAATTAAACTGAACTCTTCAGGATGAAA TGGAGGACGAAAGAGCAGCAGAGCTTCTCTTCACACGCTTGCAGGATTCCCCGGATGATGCATCTCTTCATTTTGATATTGTCTCAATTTCAATTCATTT TTCATTTTCATTTCGTCTCAATTTCAATTCATTTTTCATTTTCATTTCCTCTCAATTTCAATTCATTTTTCATTTTCATTTCCTCTCAATTTCAATTCAC TAGTCATTTTGATATTGTTTGAACTTGAATTCGTTACTGATTTCTCCATCCACAGATGAGTTTAGTTATAATAATCTCATTGTTTTGTTTTGTCAGGGCA TATTGTTATGGGAAAAAGAAGACACTAAGGAAAAGGCTGCTCAACATTTTATCATATCTGCCAAATTGAACCCTAATAATGGACAAGTTTTCACATATCT GGGCCATTATTATAGCAGCACTAGCAATGACACTCAGCGAGCCATTAAGTGTTACCAACGAGCTGTTGCGCTCAATCCTCTTGATTCCAATGCTGGGGAA GCTCTTTGCAACTTGCTTGACCAAGGAGGAAAGGATAGTTTGGAGGTGGCAGTGTGCTACGAAGCTTCTCAAAACTCACCCAGGGCTTTCTGGGCTTTCC GTAGATTGGGTTTGCTGCAGCTTCATCAAAACAAATGGCCTGAAGCTGTTCAAAGTCTTCAACATGCCATACGAGGCTATCCCACTTCTCCTCATTTGTG GGAAGCTTTGGGCCTTGCTTATCACCGGCTCGGCAGGTTTACTGCTGCTCTAAAGTCTTATGCCCGAGCCATTGAATTGGATAATACCATGCTCTTTGCT TTCATTCAAAGTGGAAATATCTCCTTAACTCTTGCTTCATTTAGAAAGGGTGTTGAACATTTTCGACAAGCTCTGGAGATTTCACCGCAATCTGTGCCTG CACAATATGGACTTGCTTTGGCACTGCTTGGTTTGGCAAAAGATTGCATTAACCTGGGAGCATATCAGTGGGGGGCTTCATTGTTAGAGGAAGCATCTGA GGTTGCTAGGGCATGTGCTTTTTTTGTTAGGAATGTCTCATGTATTTGGAAACTGCATGCTGATATCCAGCTTACATATGCAAGATGTTTTCCTTGGATT GAGGATGTCCAAGAATTGGAGTCCGATAAGGAGGCTTTCAGTGCTTCCATTATTTCTTGGAGGATGACCTGCTTGTTGGCTGCAAGACGTGCAATGTTTT CGTATCAACGAGCCCTGCACTTGTCACCATGGCAAGCAAACATCTATGCTGACATTGCAGTAACTTCAGATCTTATTACTTCATTGAGTGAGAATTGTAA ACAAGACTCAAGTGCATGGCTACTGCCAGAGAAGATGGCTGTGGGAGCCTTGCTACTTGAGGGTGACAATTATGAGTTCTGGATGGCTTTGGGATGTTTG TCGCACCATAATGCACTTAATCATCATGCTTTAATCAGGGGACTGCAATTGAATGTATCTCTAGCTGTTGCTTGGGGATATCTTGGTAAGCTGTATTATA AAATGGGTGAAAAGCAACTGTCAAGGCAGGTATTCGATCGTGCTAGAAGTATTGATCCTGGCCTTGCATTGCCATGGGCAAGCATGTCAGCTGAGTCTTG TATTAGGGAGCTTGAACTAGATGAGGCATTTGAGAGCTGTTCACGAGCTGTGCAGATAATGCCTTTAGCTGAATTCCAAATTGGTCTCACCAAACTTGCT TTGCCAAGTGGCCGTCTGTCATCTTCACAGGTTTTTGGAGCTATTCAACAGGCTGTGCAGCATTCTCCTCACTATCCTGAATCCCATAATTTACATGGGC TGGTTTGTGAGGCTCGAAAAGAGTACAAGTCCGCTGCTGCTTCTTATAGGTTAGCACGTCATGCAATCAACATTGGCTCATGGAATATTGCAGACTCACA AGTGAAGGATATATCAATCAATTTGGCCAGATCGCTTTCTTTGGCAGGGAATGCTGTTGATGCTTTGCAGGAATGTGAAAATTTGAAAATCCAAGGGGCA CTTGACGCAGAAGGCTTACAGGTATATGCTTTCTCATTGTGGCAACTTGGTGAAAATGGTTTGGCTCTCTCTGTAGCTAGAAGTCTTGCTGCAACTCTTT CTTCTATGGAAAAGGCATCTGTTGCCACATCCATATGCTTCATCTGTAGATTGATATACTACATGTGTGGACTGGATGCGGTCATCACTAACATTGTAAA AATGCCAAGGGAGCTATTTCAAAGTTCAAAAGTTTGTTTTGTTATGTTGGCTATCAATGCTCTTGATGGAAATAATCGTCTTGGATTTGTTGTCACAACT AGCCGATATTTTCTCAAATATCATGAAGAAATTGCCAGGATGCACTTTTTAATAGCGCTTGGTAAACTGGTCAAAAATGGGTCTGTTTGCTGTCTTGATG TTCAGAGTGGAGTTGCCTACCTCAAAAAAGCTATGCACATGTTCCCTAACTGTAATTTGATGAGGAACCTTCTTGGCTATCTCTTGCTATCCAGTAAAGA GTTAAACGATTGTCATGTGGCGATAAGATGCTGTAAACTGGGGCATCTTGATCTTTCTGATGAAGAAGGTTTAAAATCAGCTTTTGATATTCATGGTGCT GGAGCAGTTGCTTGCTATGCCACTAGCAACAGCAGTCCGAAGTTTACTTTTCCAACTTGTACGATGCAGTGTTCTAGTCATTCTGGAGCTATCAGATACC TGCAGAAATCTTTTCACCAGAAACCTTGGAATCATGATGCCCGGTACTTGATTGTTCTTAATTATCTTCAGAGGGCACGTGAAGAGAGATTTCCTCATCA TCTTTGTGTTATACTAAAGCGTCTAACTCATGTTGCCCTCGCAAATGAATTGTATAGCAAGACAGAAATGTTGTATCAATATAGACACTTCCAACTTCTA CTTTGTGCCTCTGAGATCAGTTTACAATGTGGGGATCACATTACCTCTATCTCTCATGCGAAAAAGGCTTCTGAACTTGTGCTTCCTGATGATTACTTAT TCTTCGCTCATCTACTACTGTGCCGTGTGTATGCCATGATAGGCGATCATCTAAATTTTAAGAATGAGTTTGCACAATGCTTGGAGCTTAGGACAGATTG CCATATTGGTTGGATTTGTCTCAAACTAATGGAATGTCGGTATGAACTGCAAATCAGCTCCAATGTCATAGATCTGAACTTTGAAGAATGTGTTCAAAAG GGTGGAAATTCATGGAATATGTGGATGGCTGTATATAACCTAGTGAGAGGTATGATTTCCTTGCAGAACAGGGATTTATTCTCCGCAGAAGAGTTTATGG GGCAGGCTTGTTCTTTGACAGGTTTTGAGAGCTGCCTCTTTCTATGTCATGGCGTTATTTGTATGGAGCTTGGCAGGCAGCTCAATGATTCTAAGTTCCT ATTACAAGCTGCTATGAGTCTTACCAAAGTTCACGAGCTTTCATTAATTCCCTTGCCTCTTGTCTCTGTATTGGTGGCTCAAGCAGAAGGAAGCCTCGGT TCTAAGGAGAAGTGGAACAGAAATCTTTCGTTTGAATGGGATACTTGGCCACCAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_168776; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_484980
| Blastp | Tetratricopeptide repeat protein SKI3 from Arabidopsis with 54.61% of identity |
|---|---|
| Blastx | Tetratricopeptide repeat protein SKI3 from Arabidopsis with 56.29% of identity |
| Eggnog | Tetratricopeptide repeat domain 37(ENOG410ZG1H) |
| Kegg | Link to kegg annotations (AT1G76630) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423132.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |