Ll_transcript_483390

• Id Trinity: TRINITY_DN49386_c0_g1_i14
• Name Transcript: Ll_transcript_483390
• Sequence: CTCCTGGTCAAACTGAAAGACCACGACCACAGTAGCAACTGAACCCTTTTGTCAGCCGCTACGGTTTCTGAACTTCTATATCAAACCACACTCTTTTCCT TCACCAACAGTAGTAGTAACATTTTTTTGTTCACTACTCAAACCCTGTGGCAACAAATCTGAAAGTTCTCTACCTCTTTCTTCTCCTACTACAGATCCAT CACTTTGTTTTCTATGGCCTGAAAAGTCTTATTTTCATTTGAATTTTCTTCCTTTCTCTTTTTAAACACTTCATTTATATGTGCCAAAGAATGAGTCAGA GTCAGAGACAAAGACACCAGGGTCAAGGGTTTTAGGTGAAGAGAGAGAAAACTAGATGCAAAACAACAACACCTACCATAACCATTTTTTTCCTTCTTTC TCTATTACCCTTTAGCTTAGATAGAGTTTGGAACATATTCTCTTGATGGGTTTTGGTTAAAGTTTCTATCTTTATCATTTCCCTAGTTAGTTACTTTTAT TGCCTGTATTGTTTGTCTCAATATGTTAGGTGGAGAAGAGGGTGAGGCCTCTGCCGGAGCTGGTCACCGGAGAACTTATTCCCGGTCAGTTTCATGGACT GATCGAGCTCCGTCGAGCCGAAAGCCACCGAACAAGTCAAGGTCATTGTTGCCATCACTTCAGCCACTTTCTATTAATAAACGCAGTGTTCAGGAGTGGC CAAGTGCTGGATCTGATGACCTTGGAGTTTGGCCACTTCCTCAGACTCCAAGAGGGTCAATCAGATCCACGGAACCGGGTGCTATGAAGGAGTTTCAGTT CAAGAGGGAGAAGCTGGCTTTCTATGACAAAGAGTGTTCTAGAATTGCTGAACATGTGTATCTCGGAAGTGACACAGTTGCAAAGAACCATGAGCTCTTG AGGCAGAATGGGATCACTCATGTTCTTAACTGTGTTGGTTTTGTTTGCCCTGAATATTTCAAGAGTGATTTTGTGTATAAGACTCTTTGGTTGCAGGATA GTCCAACTGAGGACATCACTAGTATTCTGTATGATGTTTTTGATTACTTTGAGGATGTTAGGGAGCAAGGTGGGCGTGTCCTTGTTCATTGCTGCCAAGG GGTTTCGAGATCAACGTCGTTGGTGATTGCATATATCATGTGGAGGGAGAGTCAGAGCTTTGAAGATGCTTTTCAGTATGTGAAGAATGCAAGAGGTGTC ACCAATCCAAACATGGGTTTTGCTTGTCAATTGCTTCAGTGTCAGAAAAGGGTACATGCTATGCCTGCTAGTCCTAATTCTATTCTTAGGATGTATAGAG TTGCTCCTCATTCACCTTATGATCCTCTTCACTTGGTCCCTAAGATGGTTAACCAGCCATGTTCCCAAGCACTTGATTCTCGGGGCGCTTTTATTGTCCA TGTTCCTTCTGCTATATATGTTTGGACTGGTAAGAATTGTAACTGTGTTATGTCTTGTAATGCAAAATCGGCAGCTGATCAGGTTATACGTTATGAGAGG GCGAAAGGTCCAGTTATTATGATCCATGAGGATGAGGAGCCACCAGATTTTTGGATTGCTCTTTCCAATGAGCAATTATTAACAGGTACTTGTGATAAGG CAGAGGTCGAGAAGGATGCAGCATTGGCTTCTTCTGAAAGAATGGAGATTGATGATGCAAATGATAAACGGATTCGTCCAAGGAAAGTCACTGACTATGA TTTAGATTTTGAGATTTTTCACAAGGCACTTGCTGGTGGTGTTGTTCCACCTTTTTCTGTGTCTAATGCTGAATCAGAAACTTGCCTTCCCGCTAGAGAA CACGGTTGGGGGAGATTGAGGAGGAAGCTTGCTAGCGGTCTCATGAAAGGACTGTTCACAACCTGCAAAAACACAACCTCGTCCAAAGATGAATCGTCTG TTATCATGGAAGAAGAAGAAAAACAACACTCTATTGTTGATCTTTCATCACCATCATCAAACCATCCTTGTGGTTCACCGGATTCATTTGAATGTTTTCC GGATAACAGCTCAGACAGGGCAAAAGATACACTTGAAGTATTGGACCACTTTGTTCCTAGTGTTGATTCATCCCTGCCACCATCTCCTGGAGGAATGTCG GATTCCTTTGCTTGTTTCCTAAGCAACAGCCCAAAACTCAGTTCCAAGTCACCAACGCTTTCACCTTCAAGTTCTGATTATGACAGACAAATTAAATTTT CTGCTTCATCAAAAAACTGATATTCTCGGCTGTCATCACCTTCTAGCCTGAAAGCAACTGAAGCCCTTTATGGTAAAGATGCATCTTTCTCAAATGGTTT CTTTTCGCTTCAGAAAGAAACCGTCTATTCGCGTTCAGAGGGATTTTCGGATAATAACACATTGGGAGGAGCAAAGTTCTATTCTCCAAGTAAAGGACCT TCTTCACCTTCCATCGCAGAGCACAGCGGAGCAATCTGCCACCTTGGTCAATGAATCACCCCATGCCCCAAGGTCTTGGTTTGATCGCAGTCATTCTCTT TGCCCAACTTGGATGATAATTTGAAAAGGATGTTATTTGCAATCAATCTGATCAAGACAGTGGAAAACGGCCGATTCTGATATCATCCCTACAGGTGTTG AAAGTGAGAATGATGGCAGGGATCATTGTAGTATAGTATTGTGTCATGTAATATGTTGGTTATGCTTTTAGTACAAGTACAAGAGATGTGACAATAGTTC AGTTTCTTCATTTCTACCCTACAGTTGAACCCAATGATATATTTTTGGAGGTGAATTTGCATAATCTAGGCCTAATATTGATGCAAGTCTGCTAGGAGTA CCATAGGCTGAGTAATAACTACAGAGATACAAGCTGTTCACTGATAGCATCTGAAGTACATGACAATGATTGAACATTAGTGAATATAA
• Tissue: pods
• Gene name: LI_gene_168906;
• Additional information: details;

Expression of Ll_transcript_483390

FPKM

• PAB: 0
• PNAB: 0.1
• PS1: 0.7
• PS2: 0.6
• PS3: 1.1
• PW1: 0.1
• PW2: 0.2
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_483390

• Blastp: Protein-tyrosine-phosphatase MKP1 from Arabidopsis with 50.69% of identity
• Blastx: Protein-tyrosine-phosphatase MKP1 from Arabidopsis with 56.52% of identity
• Eggnog: dual specificity phosphatase(COG2453)
• Kegg: Link to kegg annotations (AT3G55270)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019464013.1)
• Pfam: Dual specificity phosphatase, catalytic domain (PF00782.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;