Ll_transcript_352809

• Id Trinity: TRINITY_DN49406_c0_g2_i3
• Name Transcript: Ll_transcript_352809
• Sequence: CGACACAACGTCGTTGACATGAAAACAAACGACATCTCCCACCCGTCGTTTTGGCAGAAACTACATTCCTAAGTTTCATTCTTTATCTCAAGCCAAGCCT GCTACTACAAATGCAGAACATGAAGAGAAAGAGAGAAGGTGAAGCGGGAATGGATATAGTGTGGCAGACCCCAGCGAATCCCCCGCACCCTCAAGACTAC ATTTTTCGTAACGGGACACGATACGTTAAACCCTACTACTTCGAGTTTATAGCTCATGTTAAAAATCGATGGGCAGGGAAAACCATTGTTGATTTATTCG CCGATGAGTTTAAGGGTCGACCTTATGAATATTATGTTAGTGCAGTAAAATGTGGAAGGATTCAAGTTGACGGTGGGATGGTGCCAGTTTCATACATGGT TAAATCATCTCAAAAGATAAGCCATTTCGTACACAGGCATGAACCACCTGTGATGGCTTGCGTTGTTCCTATTCTTCAAAAAGAACCGGATGTGCTAACA GTTTGTAAGCCAGCATCCGTCCCTGTAAGTAAGCATTAACAAGTGGACTGATGAATTGACGATTTTATAAACCTGTCATGTTCAGTAAGATACATAGGGA ATGTACTTGCTCTCTTCCAGCTGTTTCCTAACTATTGTTTTTAGTCTTATGATGTTTTCTTCTGATTTTTACTGAAAAAAACATAAATTCTTGTATCGAT CTTCTATGAATATGCAATTTACTAATACATACGTTATATTTTGTAATTAGAATAGTTTTAGCAATAATACCCCTCTGTTAAGATGTCACTTTTTTTGCAT TACTATCAAAGATGCATAAGAATTTCTTCAAAACAAAGATACATAAGAATTGGCTACAAAGGACAAAATGCAATATCTTTTTAGTGGGAATGCCTCTGTG TATCTCTGTGCCAGATCCAGAATGTTTTTAGCTTTCTGCTTGTCTTATTTTACATGTCGTGGGTTTTCAATTGCTTAGTATCTCCAAAAGACTGAAATTA GCATCCTAATTATTCATTTATTCAGTAAGCTATTTTGAACTCTGCTAAAACGAATGTATTTTCGTATGCTTCTCTGATAAGCTTACTGACATAAGCTAAA CAAGCTTATAGGGAGGTCATAGGCTATTTTCGTAAGCTTAGGAAAATAAGCTGTTTTCACTTCTCAAAAGTCAACTAAGCTCTCTAGAATCACTTAACTC AATATGATTAACAAGATGTTGCTTTTATGGTATTGAAATTATTTCCTTAAGTTCTATGAAAAGAAAGTCTGAATTCTAAACTCATTTTTCAGTACTAAGA TACAAGATACATTTGTAAAATTCAGTTGCTTCTTAATCATAGACTGATCTGTATTTCATATTTCATATGTGCTAATGCTGTGTATTTTAGCGGTTACATA GGTTCATCCATGTGGTCAATATCGTAAGAACACTGTTGTTGGCATCCTTGAAGCAGAGCATGGGCTAGCACCTCTTTTTCGTATCCAAATTTATTTTTTT GAACTAGATTATGTAATCATTATCATTATAAAAGATAAATGTTTTATGCTAATAAGGTTTTTGATTTCCAATTACCACAGAAAACATGTATATTAGAGGG TGAGCCTCGGCACAACGGTAAAGTTGCTTGCCTTGTGACATTGAGGGCTTGAGTTCAAATCCTGGAGACAACCTCTTATAGCTTGACAGGGCAGGACTGT GTACATCTATCCTCCACATGCCCCACTAAGTGGGAGCCTCATGCATTGAGCCGCTCTTTTATAGATAACATATATATTCTCTCTCGTACATAGTTTCTTT GCATACCATATCTGTTGCAGTTTATACATTTGTATTTTGCCTTGACATGATCATCTCAGCGATTCATCGACTGGATCGCCTTGTCTCAGGACTTCTCATT TTGGCTAGAAATGCTTCTAAAGCTGATATGTTTCGGCAGCAGATTGAAGGTGGCTTAGTCAAGAAACAATATATAGCAAAAGTAGTTGGCGAGTTTCCTA AGGATGAGCTAATTGTTGATGCGAATATAGACTACAATGCTCGAGAAGGAAGGAGCACAGCAGAGGTCAGAGACTCTGCAAAGGGGAAGACTGCCTCTAC GAAATTTAATCGGATTAGTTCGAATGGTACTCAAAGTATTGTTTTATGTGAACCAGTAACTGGTCGTACTCATCAGATACGTGTTCACTTACAGCATTTG GGACACCCAATAGCCAATGACATGCTGTACATCTCAGAACAAACTATTGATCGATCTAGTAAAGGGTCAAGTGCCGATAGATCAGCTCGCATATCTGAAG CTTCCCTGACATCAAATTTTGATGAAAAAGTGATCAATGAATGTGAAGAAAATTCAGATTCCGATTTAAGCATTGATCCCATGTGTACAAACTGTCCAAA TTTGGCACCCAAAGGATATGATGGTGATGAAGAAGGTCTATGGCTACATTGTTTTCGGTACTGTGGACCTGGATGGGAGTATGAATGCCCATATCCTGAT TGGGCCAAACTTAGCTAGACAATTTAATCATGGGACTCTTACAAAACATATAACAGCAATTTATCTGAACCTTAAAACCCAACACACTTTAGTTGGAAGC ACATCTTCTGTCTCATAAAGTGTATCACTCTATGTATCATTTGATGTTTCATAAGAATTTTCAGTCTGAGTTGGTTATTTATTCTTTTTATCCAGAGACA CTACAGAAGAATGAACATTTATTATTATTTTGGTGGCAGAGGAAAGGTGTACAAGATACACAAGATGTTTCTATCTGAAAATGACATGTTTTGTTAGTGC AAATGTACTAATATTTTGTGGTCAAAGTATGTGTTGCTTTTTGGACGTGAATGTATTGCATTTGGCAACTGAGTGAAAGGAACTTGGAGGACAAATTATT AAGACATATGTTCTTACATGTAACAGCTGGCTGAACAAGATTATGGACGAATTTCGAAGTAGGATTGAGTGTTTGAGTTTGCGGCTGTTACTTGTTTTAT ATAATATACAATAATGTTTTATTTGTTCTAGTTCACAATTTTTAATATAGGCTTCAAATTAAATTAAATACAGCTTCACTTTCTCATATCAATTCTATAT GAACATATTAGATAATAAATATTAC
• Tissue: pods
• Gene name: LI_gene_169072;
• Additional information: details;

Expression of Ll_transcript_352809

FPKM

• PAB: 3.3
• PNAB: 4.5
• PS1: 2.4
• PS2: 2.4
• PS3: 3.7
• PW1: 2.3
• PW2: 2.1
• PW3: 1.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_352809

• Blastp: RNA pseudouridine synthase 7 from Oryza sativa with 60.62% of identity
• Blastx: RNA pseudouridine synthase 7 from Oryza sativa with 60.62% of identity
• Eggnog: pseudouridine synthase activity(COG0564)
• Kegg: Link to kegg annotations (9269812)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019417833.1)
• Pfam: RNA pseudouridylate synthase (PF00849.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;