Ll_transcript_352837

• Id Trinity: TRINITY_DN49406_c0_g2_i8
• Name Transcript: Ll_transcript_352837
• Sequence: CGACACAACGTCGTTGACATGAAAACAAACGACATCTCCCACCCGTCGTTTTGGCAGAAACTACATTCCTAAGTTTCATTCTTTATCTCAAGCCAAGCCT GCTACTACAAATGCAGAACATGAAGAGAAAGAGAGAAGGTGAAGCGGGAATGGATATAGTGTGGCAGACCCCAGCGAATCCCCCGCACCCTCAAGACTAC ATTTTTCGTAACGGTAACATCGAATCTCTCTTCCTCAAAGGTTTCACACATTCAAATATAAGCAGCGCAACATTGTTAAAAATCGATGGGCAGGGAAAAC CATTGTTGATTTATTCGCCGATGAGTTTAAGGGTCGACCTTATGAATATTATGTTAGTGCAGTAAAATGTGGAAGGATTCAAGTTGACGGTGGGATGGTG CCAGTTTCATACATGGTTAAATCATCTCAAAAGATAAGCCATTTCGTACACAGGCATGAACCACCTGTGATGGCTTGCGTTGTTCCTATTCTTCAAAAAG AACCGGATGTGCTAACAGTTTGTAAGCCAGCATCCGTCCCTGTAAGTAAGCATTAACAAGTGGACTGATGAATTGACGATTTTATAAACCTGTCATGTTC AGTAAGATACATAGGGAATGTACTTGCTCTCTTCCAGCTGTTTCCTAACTATTGTTTTTAGTCTTATGATGTTTTCTTCTGATTTTTACTGAAAAAAACA TAAATTCTTGTATCGATCTTCTATGAATATGCAATTTACTAATACATACGTTATATTTTGTAATTAGAATAGTTTTAGCAATAATACCCCTCTGTTAAGA TGTCACTTTTTTTGCATTACTATCAAAGATGCATAAGAATTTCTTCAAAACAAAGATACATAAGAATTGGCTACAAAGGACAAAATGCAATATCTTTTTA GTGGGAATGCCTCTGTGTATCTCTGTGCCAGATCCAGAATGTTTTTAGCTTTCTGCTTGTCTTATTTTACATGTCGTGGGTTTTCAATTGCTTAGTATCT CCAAAAGACTGAAATTAGCATCCTAATTATTCATTTATTCAGTAAGCTATTTTGAACTCTGCTAAAACGAATGTATTTTCGTATGCTTCTCTGATAAGCT TACTGACATAAGCTAAACAAGCTTATAGGGAGGTCATAGGCTATTTTCGTAAGCTTAGGAAAATAAGCTGTTTTCACTTCTCAAAAGTCAACTAAGCTCT CTAGAATCACTTAACTCAATATGATTAACAAGATGTTGCTTTTATGGTATTGAAATTATTTCCTTAAGTTCTATGAAAAGAAAGTCTGAATTCTAAACTC ATTTTTCAGTACTAAGATACAAGATACATTTGTAAAATTCAGTTGCTTCTTAATCATAGACTGATCTGTATTTCATATTTCATATGTGCTAATGCTGTGT ATTTTAGCGGTTACATAGGTTCATCCATGTGGTCAATATCGTAAGAACACTGTTGTTGGCATCCTTGAAGCAGAGCATGGGCTAGCACCTCTTTTTCGTA TCCAAATTTATTTTTTTGAACTAGATTATGTAATCATTATCATTATAAAAGATAAATGTTTTATGCTAATAAGGTTTTTGATTTCCAATTACCACAGAAA ACATGTATATTAGAGGGTGAGCCTCGGCACAACGGTAAAGTTGCTTGCCTTGTGACATTGAGGGCTTGAGTTCAAATCCTGGAGACAACCTCTTATAGCT TGACAGGGCAGGACTGTGTACATCTATCCTCCACATGCCCCACTAAGTGGGAGCCTCATGCATTGAGCCGCTCTTTTATAGATAACATATATATTCTCTC TCGTACATAGTTTCTTTGCATACCATATCTGTTGCAGTTTATACATTTGTATTTTGCCTTGACATGATCATCTCAGCGATTCATCGACTGGATCGCCTTG TCTCAGGACTTCTCATTTTGGCTAGAAATGCTTCTAAAGCTGATATGTTTCGGCAGCAGATTGAAGGTGGCTTAGTCAAGAAACAATATATAGCAAAAGT AGTTGGCGAGTTTCCTAAGGATGAGCTAATTGTTGATGCGAATATAGACTACAATGCTCGAGAAGGAAGGAGCACAGCAGAGGTCAGAGACTCTGCAAAG GGGAAGACTGCCTCTACGAAATTTAATCGGATTAGTTCGAATGGTACTCAAAGTATTGTTTTATGTGAACCAGTAACTGGTCGTACTCATCAGGCAAGGA ACTCTTAGGCTAATTTCAGCTGATATGGATTGATTGTTTCTCACCACTCAAAGCTTAGCCAGCACATTTAATACTTTTCTATTTTTCCTCAGCTGAAGAT GTTTTCGATCTTTATACATGGTTATTCTGTTGAGTTACAAATTATTATCTTCAAACTCCAATATATTTTGAGGCTGAGCTCTTGCCATTACATGTACATA AATATGTAGTTGATTTGCTTCCGCACATGCTGGCTCGCCATTGGTGTCACACAGTGACAACACATCCAAAGTGGGCTGAATGCCAGTCGTGCTGTCTCTC TATTCGTAGTATTATTTTAGGCAGCAATTTCATCAGCTGAAGATGATACCATTGTTCCTCAGCTGAAGATGATGCTTTTGATCTTTATAACGTGTTTATT CTGGTGATGTAATTCCATTGCATGTCTCTGGTATCTTAGTTACGCATGATTAAGAAAGACTTAGAAGTAAATTTTTTGTCAATTAATATGATTTATTAGA GAACATTATGACATTGTTTGATCCATGTAGCCGATCCCACCTAATGGGATAAAGGATTGATTGTTGTTATTGTTGTACGTTTTGGGGCTAAACTCTTGCA GTCACATAGATGTAAATATGACGTCGTTGATTTGCTGCCACATGTGCTGACTCGCATGTGATGTGTCACAACAGTGTCATCACATCCAAAGTAGGCTGCA TGCCAGCCTTGCTTTCTGTATTTGCATTACAATTTTAGGCGACAATAAGTTTCATCGTTTCATTAATACCATTGTGTGAAAAGAGAGCAGTAAAGGAAAT GGAATAAAAACCAGAGATGCAGTTATGAGGACCAAAGACATGGTGCACTTTATCTGTTCAACTTGTTAGTATTATAAATATTGGTGCTAACAAGTACTCA CCTCTTGTGTAGATACGTGTTCACTTACAGCATTTGGGACACCCAATAGCCAATGACATGCTGTACATCTCAGAACAAACTATTGATCGATCTAGTAAAG GGTCAAGTGCCGATAGATCAGCTCGCATATCTGAAGCTTCCCTGACATCAAATTTTGATGAAAAAGTGATCAATGAATGTGAAGAAAATTCAGATTCCGA TTTAAGCATTGATCCCATGTGTACAAACTGTCCAAATTTGGCACCCAAAGGATATGATGGTGATGAAGAAGGTCTATGGCTACATTGTTTTCGGTACTGT GGACCTGGATGGGAGTATGAATGCCCATATCCTGATTGGGCCAAACTTAGCTAGACAATTTAATCATGGGACTCTTACAAAACATATAACAGCAATTTAT CTGAACCTTAAAACCCAACACACTTTAGTTGGAAGCACATCTTCTGTCTCATAAAGTGTATCACTCTATGTATCATTTGATGTTTCATAAGAATTTTCAG TCTGAGTTGGTTATTTATTCTTTTTATCCAGAGACACTACAGAAGAATGAACATTTATTATTATTTTGGTGGCAGAGGAAAGGTGTACAAGATACACAAG ATGTTTCTATCTGAAAATGACATGTTTTGTTAGTGCAAATGTACTAATATTTTGTGGTCAAAGTATGTGTTGCTTTTTGGACGTGAATGTATTGCATTTG GCAACTGAGTGAAAGGAACTTGGAGGACAAATTATTAAGACATATGTTCTTACATGTAACAGCTGGCTGAACAAGATTATGGACGAATTTCGAAGTAGGA TTGAGTGTTTGAGTTTGCGGCTGTTACTTGTTTTATATAATATACAATAATGTTTTATTTGTTCTAGTTCACAATTTTTAATATAGGCTTCAAATTAAAT TAAATACAGCTTCACTTTCTCATATCAATTCTATATGAACATATTAGATAATAAATATTAC
• Tissue: pods
• Gene name: LI_gene_169072;
• Additional information: details;

Expression of Ll_transcript_352837

FPKM

• PAB: 0.6
• PNAB: 0
• PS1: 0
• PS2: 0.1
• PS3: 0
• PW1: 0
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_352837

• Blastp: RNA pseudouridine synthase 7 from Arabidopsis with 71.68% of identity
• Blastx: RNA pseudouridine synthase 7 from Arabidopsis with 71.05% of identity
• Eggnog: pseudouridine synthase activity(COG0564)
• Kegg: Link to kegg annotations (AT5G51140)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019417834.1)
• Pfam: RNA pseudouridylate synthase (PF00849.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;