Ll_transcript_354486

• Id Trinity: TRINITY_DN49411_c4_g1_i1
• Name Transcript: Ll_transcript_354486
• Sequence: CATTAATTCAAATCATTGAATTTCCAAGAAATTGATGACTAAGATGAAGAGTAAGTCTAAAAGAGTTACGACTCTTCCCCGAATATTTAGAGATTACTTA TAAAGTTAAGACACTTGCATTCCATCTCCAGTTCATTTCTCTCTCTCTCACTATCACATACATGGCCAAATCAATTTCTCTAACTAATCACCTTTCCAGA CTCATATCTTATTCTTCTTCTTCTTCTTCAACAATAACAACACTCACATTCCTCTCTCGATCTCAATTCCATTTTCCTTTTAGAAGTTTCTCTTTCAGAC CTCTCTCCACCAATACCACTCCATACCCTCTCCAATACGACTTAATTATCAATCGCCCTCCTCCCCAAACACCTCGCCCACCACCTGTTCGATCAAATTC CTCTCATGACAATGCCGTCTCTGAACCCGATGAACCCGACCTTAGACTAGACACCTGGGTGGACCGGAAACTCGCCCAACCGGGTTCCCAACTTGAAAAG GGAAAGAGAAAGTATTACAACAAAAGGAGGAAGAGGATGTACGGTGGTTCTGACTCTGATGAAGATGGTAACAGGAGAATGGAGGATGAGATGATTGAGC TGAAACCTGAAGTTATAGAGTTTCCTACACTGCATAAGAGAGAAGAGGAACTGCATTTCTACGACGCATTTAGTTATCCGTGGGAGAAGGATAAGCATTA CAAGATGGTGTATCAGTTGGAGAAGAAGTATTTTCCGGACCAGTGTCTCGATAAGGCATTTTTACAGCCAGGGGCGAAGCAAGAGCGATCAAATGTAAAT GACAACGAAATCAAGGCCAAGAAGAAAGAGGAGGATAAGAAGTTGGTGTTTTTTGAGGGAGAGAAAGAAAAGAGTGATAAAGATGTTAGCGAGAAGAAAG TGGAGGATTTTTTTAAGGGCTTGAAGAAGAAGAAGATTAATAGTGATCCAGTTGTTGGTGATGGGAATGTGAATGGAGTAGGAGAGCCATTTTTTTCATC AAGGAGAACTGGTCTTCCTCCTGTTTGGGATAGTCCACATGGCACTGTGCTGTTGATTAACAAACCCAAAGGTTGGACTTCATTCACAGTTTGTGGAAAG CTGCGTCGCCTAGTCAAAGTGAAAAAGGTAGGCCATGCTGGAACTCTTGACCCAATGGCTACTGGTTTACTGATTGTTTGTGTTGGCAAAGCAACAAAAC TGGTAGACAGATATCAAGGGATGATTAAGGGTTATAGCGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCCGATTCACCAGTCATTCAACG TGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAATGCTTCATCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCAATGTTCTCTGCTATTAAA GTTGGAGGTGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTCTCACCAAGACGGATTTCAATTTTCCAGTTTGACATAGAGCGTAGCT TGGATGACAGACAAAATTTGATTTTTCGGGTGACATGTTCTAAAGGGACATATATTCGGTCACTTTGTGCAGATTTTGGGAAGGCTCTTGGAAGCTGCTC CCATCTTACTGCTCTTAGAAGAGATTCAATTGGGCAATATTTAGCTGATGATGCATGGGAATTTCAAGAGCTGGAAGAAGCTATTACCAAAAGTTATGTC TAACTGCTTTGTTAGCCCATCCCATGTTATGGAACCAAGGTTTTGAATTACCATTGCAGTTATGTTGTGTTTACAAAATTATCATGGGAAAACATAACCA CTGTGGTCATAATAATGGTTATGGTTTTAATGCAGTTGTAGAGGCTACCGAACTACAACCTTGCACCCTAATTATGATCACATACCTTGAGTTGAATGTT TCTTTAATATGTGCACACTGATTTATAAATTATAAACCGATTTTCAAACATGTATTTCTTTGTAGAGTTTATTTATTCTTTTTTAATTTGCTGGTTTTGA TGTTCTTTCTTTTTCCTTTTTTTTTCTGGTTGATAAGTGCATCTTGCATTATTTTGTAGTTAAATAATGCGAATTCTGATAGTTGCTAAAGGATGTTGAA AATTAGTTGATTTCTGTAGTATATTCTTATTATTAGTCATGTTAATTTGCTTCAAGGGAATAGCATGTTGGAGAAGACTCAATTGATTTATAAG
• Tissue: pods
• Gene name: LI_gene_169109;
• Additional information: details;

Expression of Ll_transcript_354486

FPKM

• PAB: 3.1
• PNAB: 14.7
• PS1: 13.7
• PS2: 8.5
• PS3: 11.6
• PW1: 11.6
• PW2: 9.8
• PW3: 8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_354486

• Blastp: tRNA pseudouridine synthase B from Flavobacterium with 48.2% of identity
• Blastx: tRNA pseudouridine synthase B from Flavobacterium with 47.75% of identity
• Eggnog: Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (By similarity)(COG0130)
• Kegg: Link to kegg annotations (Fjoh_0570)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019428203.1)
• Pfam: TruB family pseudouridylate synthase (N terminal domain) (PF01509.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;