Ll_transcript_354490

• Id Trinity: TRINITY_DN49411_c4_g1_i3
• Name Transcript: Ll_transcript_354490
• Sequence: CATTAATTCAAATCATTGAATTTCCAAGAAATTGATGACTAAGATGAAGAGTAAGTCTAAAAGAGTTACGACTCTTCCCCGAATATTTAGAGATTACTTA TAAAGTTAAGACACTTGCATTCCATCTCCAGTTCATTTCTCTCTCTCTCACTATCACATACATGGCCAAATCAATTTCTCTAACTAATCACCTTTCCAGA CTCATATCTTATTCTTCTTCTTCTTCTTCAACAATAACAACACTCACATTCCTCTCTCGATCTCAATTCCATTTTCCTTTTAGAAGTTTCTCTTTCAGAC CTCTCTCCACCAATACCACTCCATACCCTCTCCAATACGACTTAATTATCAATCGCCCTCCTCCCCAAACACCTCGCCCACCACCTGTTCGATCAAATTC CTCTCATGACAATGCCGTCTCTGAACCCGATGAACCCGACCTTAGACTAGACACCTGGGTGGACCGGAAACTCGCCCAACCGGGTTCCCAACTTGAAAAG GGAAAGAGAAAGTATTACAACAAAAGGAGGAAGAGGATGTACGGTGGTTCTGACTCTGATGAAGATGGTAACAGGAGAATGGAGGATGAGATGATTGAGC TGAAACCTGAAGTTATAGAGTTTCCTACACTGCATAAGAGAGAAGAGGAACTGCATTTCTACGACGCATTTAGTTATCCGTGGGAGAAGGATAAGCATTA CAAGATGGTGTATCAGTTGGAGAAGAAGTATTTTCCGGACCAGTGTCTCGATAAGGCATTTTTACAGCCAGGGGCGAAGCAAGAGCGATCAAATGTAAAT GACAACGAAATCAAGGCCAAGAAGAAAGAGGAGGATAAGAAGTTGGTGTTTTTTGAGGGAGAGAAAGAAAAGAGTGATAAAGATGTTAGCGAGAAGAAAG TGGAGGATTTTTTTAAGGGCTTGAAGAAGAAGAAGATTAATAGTGATCCAGTTGTTGGTGATGGGAATGTGAATGGAGTAGGAGAGCCATTTTTTTCATC AAGGAGAACTGGTCTTCCTCCTGTTTGGGATAGTCCACATGGCACTGTGCTGTTGATTAACAAACCCAAAGGTTGGACTTCATTCACAGTTTGTGGAAAG CTGCGTCGCCTAGTCAAAGTGAAAAAGGTAGGCCATGCTGGAACTCTTGACCCAATGGCTACTGGTTTACTGATTGTTTGTGTTGGCAAAGCAACAAAAC TGGTAGACAGATATCAAGGGATGATTAAGGGTTATAGCGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCCGATTCACCAGTCATTCAACG TGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAATGCTTCATCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCAATGTTCTCTGCTATTAAA GTTGGAGGTGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTCTCACCAAGACGGATTTCAATTTTCCAGTTTGACATAGAGCGTAGCT TGGATGACAGGTAAATGTTAGAACCCTCCTTGTTTAAACCCCTTGAACCAAGACCTAGGTTCACCACTAATAAATTTTTAAGTCAACCATCTTGCACTTA ATTAATGGCCAATCCATTGCTAGTTATAATTTATTCAAGAAGCCTGAATCAATGCTATCATTAGCATTGTTGAAATCCATTTTTAGTACAAATCCTAAAC CCTTTCCTCTTCTGAAGTCCTTAATTACTTCATTACCCACAAGCACGGCACAAAGAATCTCTCTGCCAAGTGCCAAGCACAAAAAAATGTCTAAGTGGTA GAAACTTCTCAAGGTGGCAGGGCATAACCTGCATCTGAAAAGTAGGAAAAACTTTTTAGTACATGGCATTGGAACCGTAACTACTCTTTAAACTCCACAC TTAAGACAAAAAACTTAGAAGATACACGT
• Tissue: pods
• Gene name: LI_gene_169109;
• Additional information: details;

Expression of Ll_transcript_354490

FPKM

• PAB: 0
• PNAB: 0.2
• PS1: 0.3
• PS2: 0
• PS3: 0.1
• PW1: 0.3
• PW2: 0.4
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_354490

• Blastp: tRNA pseudouridine synthase B from Flavobacterium with 47.17% of identity
• Blastx: tRNA pseudouridine synthase B from Flavobacterium with 46.54% of identity
• Eggnog: Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (By similarity)(COG0130)
• Kegg: Link to kegg annotations (Fjoh_0570)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019428203.1)
• Pfam: TruB family pseudouridylate synthase (N terminal domain) (PF01509.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;