| Id Trinity | TRINITY_DN49411_c4_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_354491 |
| Sequence | CATTAATTCAAATCATTGAATTTCCAAGAAATTGATGACTAAGATGAAGAGTAAGTCTAAAAGAGTTACGACTCTTCCCCGAATATTTAGAGATTACTTA TAAAGTTAAGACACTTGCATTCCATCTCCAGTTCATTTCTCTCTCTCTCACTATCACATACATGGCCAAATCAATTTCTCTAACTAATCACCTTTCCAGA CTCATATCTTATTCTTCTTCTTCTTCTTCAACAATAACAACACTCACATTCCTCTCTCGATCTCAATTCCATTTTCCTTTTAGAAGTTTCTCTTTCAGAC CTCTCTCCACCAATACCACTCCATACCCTCTCCAATACGACTTAATTATCAATCGCCCTCCTCCCCAAACACCTCGCCCACCACCTGTTCGATCAAATTC CTCTCATGACAATGCCGTCTCTGAACCCGATGAACCCGACCTTAGACTAGACACCTGGGTGGACCGGAAACTCGCCCAACCGGGTTCCCAACTTGAAAAG GGAAAGAGAAAGTATTACAACAAAAGGAGGAAGAGGATGTACGGTGGTTCTGACTCTGATGAAGATGGTAACAGGAGAATGGAGGATGAGATGATTGAGC TGAAACCTGAAGTTATAGAGTTTCCTACACTGCATAAGAGAGAAGAGGAACTGCATTTCTACGACGCATTTAGTTATCCGTGGGAGAAGGATAAGCATTA CAAGATGGTGTATCAGTTGGAGAAGAAGTATTTTCCGGACCAGTGTCTCGATAAGGCATTTTTACAGCCAGGGGCGAAGCAAGAGCGATCAAATGTAAAT GACAACGAAATCAAGGCCAAGAAGAAAGAGGAGGATAAGAAGTTGGTGTTTTTTGAGGGAGAGAAAGAAAAGAGTGATAAAGATGTTAGCGAGAAGAAAG TGGAGGATTTTTTTAAGGGCTTGAAGAAGAAGAAGATTAATAGTGATCCAGTTGTTGGTGATGGGAATGTGAATGGAGTAGGAGAGCCATTTTTTTCATC AAGGAGAACTGGTCTTCCTCCTGTTTGGGATAGTCCACATGGCACTGTGCTGTTGATTAACAAACCCAAAGGTTGGACTTCATTCACAGTTTGTGGAAAG CTGCGTCGCCTAGTCAAAGTGAAAAAGGTAGGCCATGCTGGAACTCTTGACCCAATGGCTACTGGTTTACTGATTGTTTGTGTTGGCAAAGCAACAAAAC TGGTAGACAGATATCAAGGGATGATTAAGGGTTATAGCGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCCGATTCACCAGTCATTCAACG TGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAATGCTTCATCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCAATGTTCTCTGCTATTAAA GTTGGAGGTGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTCTCACCAAGACGGATTTCAATTTTCCAGTTTGACATAGAGCGTAGCT TGGATGACAGACAAAATTTGATTTTTCGGGTGACATGTTCTAAAGGGACATATATTCGGTCACTTTGTGCAGATTTTGGGAAGGCTCTTGGAAGCTGCTC CCATCTTACTGCTCTTAGAAGAGATTCAATTGGGCAATATTTAGCTGATGATGCATGGGAATTTCAAGAGCTGGAAGAAGCTATTACCAAAAGTTATGTC TAACTGCTTTGTTAGCCCATCCCATGTTATGGAACCAAGTTGTAGAGGCTACCGAACTACAACCTTGCACCCTAATTATGATCACATACCTTGAGTTGAA TGTTTCTTTAATATGTGCACACTGATTTATAAATTATAAACCGATTTTCAAACATGTATTTCTTTGTAGAGTTTATTTATTCTTTTTTAATTTGCTGGTT TTGATGTTCTTTCTTTTTCCTTTTTTTTTCTGGTTGATAAGTGCATCTTGCATTATTTTGTAGTTAAATAATGCGAATTCTGATAGTTGCTAAAGGATGT TGAAAATTAGTTGATTTCTGTAGTATATTCTTATTATTAGTCATGTTAATTTGCTTCAAGGGAATAGCATGTTGGAGAAGACTCAATTGATTTATAAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_169109; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_354491
| Blastp | tRNA pseudouridine synthase B from Flavobacterium with 48.2% of identity |
|---|---|
| Blastx | tRNA pseudouridine synthase B from Flavobacterium with 47.75% of identity |
| Eggnog | Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (By similarity)(COG0130) |
| Kegg | Link to kegg annotations (Fjoh_0570) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428203.1) |
| Pfam | TruB family pseudouridylate synthase (N terminal domain) (PF01509.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |