Ll_transcript_354335

• Id Trinity: TRINITY_DN49419_c3_g2_i2
• Name Transcript: Ll_transcript_354335
• Sequence: GATACATTGAGATTCTTTTATACAATTTCCTCTCCCTTATTCATTACTCTTCAATTCCTCTTTAATTCAATTTTTTTCCAGTTCTTTCTTTCTCTCTTTC ATTGCAATTCTTGTTCTGTATTTTCCTCAACATTTGGTATCAAGAGCTTTGCAAGAAGATCTAGTTTTCCGCTGCAACAAAATGGTCCAAACTTCAGGAA ACTTTGCCACTGTGGTGCCCATCCTCGATGGCAAGAATTGGAGCAGATAGTGTGTGCAAATGAAGGCAATTTTCGGGTATCAAGATGTGGCTGAAATTGT GGAAGAAGGGTTGCCAATCTTGGAAGAAGGTGCTACTGAGGCACAAAGGAATGCACACAAGCAAAAGAAGAAGAGGGACTGCAAAGCAATATGCCTTCTT CATCAAGCAGTGGATAATGCTCACTTTGAGAAGATTGCAGGATTTGCAACAACAAATGAGGCATGGGATGTGTTGGAGAAACACTATGCAGGGGTTGCTC AATTGAAGAAGATTAGGCTACAAACCATGAGAAGACAATATGAACTCATGGAGATGGATGAAGATGAAAGAATTGCTGACAATTTCACAAGGTTGCTCAC TCATACCATGCAATGAAGACTTGTGGTGAAAAGATGAATGAAGCAACAATTGTGGAAAAAGTGCTCAGATCAGTGACCCCTAAATTTGATCATATTGTGG TGGCTATTGAGGAATCAGGAAGAGTAGAGAAGATGGTGATTGAAGAGCTTCAAGGGTCACTTGAAGCTCATGAACAAAGATTGAATGAAAGGAAGGCATG AAGATCTCCTCATCAAGCACTTCAAGTGCAGACAGCAAAAAAGGGAGTATTCTGTGCAAGAAACAATAGCAAGAATCAAGGGAAATTGCTTGATCAAAGA GGTGGCCAGAAGAAGAATTTCACAAGTAATTCTGATCAACCAGAACAAGCAAGCAGAAGAACTGCCTCTAAGCAACTGAAAGGCTTGAAAAAGAAGGTTG ATAGAAAGAAAATCAGATGCTACAATTGTGACAAAATTGGTCACTACTCATCTGAATGCTTGGCACCTAGCAAGAATCAATATCAGAGAAAGCAAGATTC AGAAGCAAATCTTGCTAAGGAAGAAACTGAGGATCCTGAAGAAGAGATTGTATAGCTCATGATGACAACAGATTGTAGCAATAGAGGAAGTGATACTTGG TATCTTGACTCTGGTTGTTCCAATCACATGACTGGACACAAAGAGTGATTGGTGAATTTTGACCCAACCAAGAGAAACAAGGTCAAGTTTGCTGATAACA GGGTTGTGCTCACTGAAGGAATAGGTGACATTCCTCTCAAGATGCAGAATGGCAGAAAAGCTTATATAACTTATGTGATATTTGTTCCTGATATGAAAAC AAATCTCAGTAGTCTTGGCCAATTACATGAAAAAGGATTCAGCATGGAATTGCACAATGGTGTAATGGAAATCAGTGATAGCTTGAAGAGGACAATTTTG AGTGCTCCTCTCTTAAGCAACAGAACCTTTCAAGTCAAATTGAGCATTCTGGACTCGCAATGCCTAAATGCAGATGAATGTTGGCTTTGGCATCTGAGGT ATGGTCATCTCAACTACAAAGACCTCAAATTGTTAAGTGTTAAGAAACTGGTCACTGGTTTGCCAGAAATCAAGCTTCAAAGCAAAGTGTGTGACAGTTG CTTAACTAGCAAGCAAGCAAGAACCTCATTTGGTAACCACTCTCAAACTAGAGCTATTGATCTCTTACATGTTGTTTACTCCGATGTCTGTGGACCCTTT GAGGTTCCTTCACTAGGAGGCAATAGATATTTTGTCTCCTTTGCTGATGAGTTTAGCAGGAAGATATGGATCTATCTCATCAAGGCTAAAAGTGAAGTAT TTGATCATGTGAAGAAACTCAAAGCTCTGGCAGAAAGACAATCAGGGAAATTTTTGAGGATTTTCAGAACTGGTGGTGGTGGTGAGTTTACCTCAAAAGA GATTGAAGAATATTGTGAGGGACATGGAATAATTCATGAAGTCACTGCTCCATATACTCCACATCATAATGGAGTAGTTAAGAGAAAAAATAAGACTGTC ATGAATATGGTAAGGTGCATGCTGAAGAGCAAAGACTTACCTCACAATCTTTGGGGTGAGGCACTTACAACAACAACATATGTACTAAATAGGTGCCCAA CTCAAGCTCTTGCAATTCAGGTTGCAGAAGAAGTATGGACTGGAAAGAAGCAACCAGTGAGGCATTTCAGAGTGTTTGGCTCACTATGCTACAAGCATGT TCCAAACTAGAGCTGTCAAAACGAGTTGGCTCAGTCGGGTCGGCCCGCCAAAACCCGAAACTTTATAGGGCTTGGGTAGTATATTTGTTACTTTTTATTA CATCCGGGATTTTTAGCCCGGCCCGACCGGGCTATATTAAAACCGGGCTCGGGTCGGGCTTACCCGAGCGGGTTCGGGCTACCCGTTTTTCCTTATTGTT TAACTTTTTTTGGGATATTTGGCTTGATAATAAGTATTATGTGAAATTTACAAAACAACTTATAATAAAAATTGTGTAATGAACTTTAAATAAAACATAA AAAAGTAATGTGTAAACATAAT
• Tissue: pods
• Gene name: LI_gene_169187;
• Additional information: details;

Expression of Ll_transcript_354335

FPKM

• PAB: 0
• PNAB: 1
• PS1: 0.1
• PS2: 0.2
• PS3: 0.3
• PW1: 1.8
• PW2: 0.7
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_354335

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 41.4% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 35.63% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019433938.1)
• Pfam: GAG-pre-integrase domain (PF13976.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;