| Id Trinity | TRINITY_DN49419_c3_g2_i6 |
|---|---|
| Name Transcript | Ll_transcript_354344 |
| Sequence | GAAGATTTTTTCCCCTCTAGCTAATTCACTGCACTCTCATTACTCTTCCTCTTCTTCTCCATTACTGTTTTACCTTCTGCCATTCTTTTTCTTCCTTTCT TCTTCCTCACGGCACTGATTCTTTTTCTCAACATCTGGTATCTAGAGCTTTGTAAGAGATCAACTTTCCGCTGCAACAAATGGCTCAAAATTCAGCAAAC TTTGCCACTGTGGTGCCCATCCTCGATGGCAAGAATTGGAGCAGGTGGTGTGTGCAAATGAAGGCAATTTTTGGGTATCAAGATGTGGCTGACATTGTTG AAGGAGGGCTGCCAATCTTGGAAGAAAATGCTACTGAAGCACAGAGAACTGCATACAAACAAAACAAGAGGAGGGACTGCAAGGCAATTTGTCTTCTTCA TCAAGCAGTGGATAATGCTCACTTTGAGAAGATTGCAGGATTTGCAACAACAAATGAGGCATGGGATGTGTTGGAGAAACACTATGCAGGGGTTGCTCAA TTGAAGAAGATTAGGCTACAAACCATGAGAAGACAATATGAACTCATGGAGATGGATGAAGATGAAAGAATTGCTGACAATTTCACAAGGTTGCTCACTC ATACCATGCAATGAAGACTTGTGGTGAAAAGATGAATGAAGCAACAATTGTGGAAAAAGTGCTCAGATCAGTGACCCCTAAATTTGATCATATTGTGGTG GCTATTGAGGAATCAGGAAGAGTAGAGAAGATGGTGATTGAAGAGCTTCAAGGGTCACTTGAAGCTCATGAACAAAGATTGAATGAAAGGAAGGCATGAA GATCTCCTCATCAAGCACTTCAAGTGCAGACAGCAAAAAAGGGAGTATTCTGTGCAAGAAACAATAGCAAGAATCAAGGGAAATTGCTTGATCAAAGAGG TGGCCAGAAGAAGAATTTCACAAGTAATTCTGATCAACCAGAACAAGCAAGCAGAAGAACTGCCTCTAAGCAACTGAAAGGCTTGAAAAAGAAGGTTGAT AGAAAGAAAATCAGATGCTACAATTGTGACAAAATTGGTCACTACTCATCTGATTGCTTGGCACCTAGCAAGAATCAATATCAGAGAAAGCAAGATTCAG AAGCAAATCTTGCTAAGGAAGAAACTGAGGATCCTGAAGAAGAGATTGTATAGCTCATGATGACAACAGATTGTAGCAATAGAGGAAGTGATACTTGGTA TCTTGACTCTGGTTGTTCCAATCACATGACTGGACACAAAGAGTGATTGGTGAATTTTGACCCAACCAAGAGAAACAAGGTCAAGTTTGCTGATAACAGG GTTGTGCTCACTGAAGGAATAGGTGACATTCCTCTCAAGATGCAGAATGGCAGAAAAGCTTATATAACTTATGTGATATTTGTTCCTGATATGAAAACAA ATCTCAGTAGTCTTGGCCAATTACATGAAAAAGGATTCAGCATGGAATTGCACAATGGTGTAATGGAAATCAGTGATAGCTTGAAGAGGACAATTTTGAG TGCTCCTCTCTTAAGCAACAGAACCTTTCAAGTCAAATTGAGCATTCTGGACTCGCAATGCCTAAATGCAGATGAATGTTGGCTTTGGCATCTGAGGTAT GGTCATCTCAACTACAAAGACCTCAAATTGTTAAGTGTTAAGAAACTGGTCACTGGTTTGCCAGAAATCAAGCTTCAAAGCAAAGTGTGTGACAGTTGCT TAACTAGCAAGCAAGCAAGAACCTCATTTGGTAACCACTCTCAAACTAGAGCTATTGATCTCTTACATGTTGTTTACTCCGATGTCTGTGGACCCTTTGA GGTTCCTTCACTAGGAGGCAATAGATATTTTGTCTCCTTTGCTGATGAGTTTAGCAGGAAGATATGGATCTATCTCATCAAGGCTAAAAGTGAAGTATTT GATCATGTGAAGAAACTCAAAGCTCTGGCAGAAAGACAATCAGGGAAATTTTTGAGGATTTTCAGAACTGGTGGTGGTGGTGAGTTTACCTCAAAAGAGA TTGAAGAATATTGTGAGGGACATGGAATAATTCATGAAGTCACTGCTCCATATACTCCACATCATAATGGAGTAGTTAAGAGAAAAAATAAGACTGTCAT GAATATGGTAAGGTGCATGCTGAAGAGCAAAGACTTACCTCACAATCTTTGGGGTGAGGCACTTACAACAACAACATATGTACTAAATAGGTGCCCAACT CAAGCTCTTGCAATTCAGGTTGCAGAAGAAGTATGGACTGGAAAGAAGCAACCAGTGAGGCATTTCAGAGTGTTTGTCTCACTATGCTACAAGCATGTTC CAAACTAGAGCTGTCAAAACGAGTTGGCTCAGTCGGGTCGGCCCGCCAAAACCCGAAACTTTATAGGGCTTGGGTAGTATATTTGTTACTCTTTATTACA TCCGGGCTTTTTAGCCCAGCCCGACCGGGCTATATTAAAACCGGGCTCGGGTCGGGCTTACCCGAGCGGGTTCGGGCTACCCGTTTTTCCTTATTGTTTA ACTTTTTTTGGGATATTTGGCTTGATAATAAGTATTATGTGAAATTTA BLAST |
| Tissue | pods |
| Gene name | LI_gene_169187; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_354344
| Blastp | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 41.08% of identity |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 35.63% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019451907.1) |
| Pfam | GAG-pre-integrase domain (PF13976.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |