Id Trinity | TRINITY_DN49439_c2_g1_i7 |
---|---|
Name Transcript | Ll_transcript_354008 |
Sequence | ATTCTAGGACATAGCTGTTTTACAAATACATATATTAATTAGAAACCAGGTTAGATAAGAGACACATCATCTTTAGTTACTACCGACCACAGTCTGTGGT TGTTGGTGATTTTATCCGTTACTTAGTGACGAAGTGAATGAAGCATTACAAGCTTGAACTGACACAAAGTGAAACCCATTTGTGAGAAGAATTGTGAGAT TTGTTCTTCAAATGATGAATTGTGAGCAATTGGGGTTCCTGGCTCTTCCTCCTTATTTATCATCACATTGCAGTAACAATAAGTGTGGATATTCATATAT TTGGCGCATGAATAAGTATACTTCTCCTCTTTTATTTGCTTCTTCTTCTTCAGCTCCATCAGTTAGTGGTTCGGGTGATGAGTATTCTGAGCCGTTGGTG GGTGTGGTTACAAAGAAGAAAAAGAGAATTATAGCTGGCATAGATCAGGACGAGTTAGTGGATCCGAAGCTTTTAGCTGATCTAGACAGTAGCTTTTGTG AGTTCAAAGGAGTACATATACACCACAAGATATATGATGCTGTATCCCAACCACAAAGCACGTTACAGAATCAAACTGTTTCTGATCAAATCAAGAAGCT AGGTTTTCCCATGATTCTGTTACATGGATTTGGAGCCTCAGTTTTCTCTTGGAAACAAGTTATGAAGCCTTTGGCAGAGGTCACTGGTTCTAAAGTTCTT GCATTTGATAGGCCAGCCTTTGGATTGACATCAAGGGTAAATTTATCTAGCCATCGTTTTTCAGGAGCAGGAGACGCAAGACCTCTAAATCCGTATTCAA TGGCATTTTCAGTGCTTGCTACCTTGTATTTCATGGGTTTATTAAATGCCGAGAAAGCAATTTTAGTGGGGCACTCAGCTGGTTCACTTGTAGCAGTTGA TACATATTTTGAAGCTCCTGAACGTGTTGCTGCTCTGATCCTTGTTGCCCCAGCAATTTTTGCTCCACTGACTACACCAAAAATTGTTAAAGAAAATCAA TCAGGACAGGATAACCAAACAGAAGAAGATAATAGTTCTAGCAGAAACAATCCAATTTTTGGGCTTTACAAGTTATTGTCCAAGATTAGCAAGCAGATTG CAGAGGCAATAACACAGATGACGAAGGGGATGATAGTTATGCTCAACTCTTTGTATCGGAAATTTCTATCAGCTATCCTGCGTTCTTCCCTAGCTATAAT GCTGGTAATAAGAAAAACTTGTTCATGGATAATGCAATAGTTCATTCAGTCATTATTGGAATAATCCAAGAGAAACAATAATTTTTAGGCTTAATAAATA CAACTACATTGAACCCATGAAAGCCTCTCCATCGAGTTGGTATCCTGTACAATTCCTTCAAACCAAATTTGTGAGTTGTTAGCATGAAGAGTAACGTTGA AGTACATGAAGTGCGCTGCATATATTTTTTTGTTGGATAACTACTTTTGGTTGTTTGTAGACTGTAATTTTCAAAGTTGCACTCTCAATAATTTGTCATG ATATTTTGGTAAACAACCTAGCTGATGGCCTCTTTGTTCATATGAATCTCAGGTAAGAATGGCAATTGATAAGTTTGGTACCGCTGCTGTTCGAAATGCA TGGTATGACCCAAAACTGGTTTCTGAGCATGTGCTTAGTGGTTACACAAGGGTAATCTCACTGTCATTTCCTATTTTCTTCCATTGTCACTAATGTCTTT TTTATGTCCCTTGTACTCATAGTCAATGCTCACCTGGCACTAAATGCAGCCATTGAGGACCAGCGACTGGGATAAGGCACTGCTGGAATACACTGCAGCA CTGCTTCTGGACGAGGAATCTAAAACAAAGCCATCGCTTTCTCAAAGACTTCATGAAATATCATGTCCTGTTTTGATTGTCACTGGTGATACTGACAGAA TAGTCCCTTCATGGAATGCTGAGAGACTTTCACGAGCCATACCAGGCGCATCGTTTCACGTAATTAAGCAATGTGGCCATTTGCCCCATGAAGAAAAAGT AGATGAATTTATTTCAATTGTTGAAAACTTCCTAGGGAGACTAGTTGGAGATTCAACTGAGCAGCATCTACAATCTGTAATGTGAAATGTCAACAACTCA AGCATCCCATTTTACATCATAGAAGATCCATATAATACATAGCAGATACTAATGCAGTTTACCAGGTGGAGAAAGATGCAGTGAAGCTGTAACGAGTCAT GATCTAACTTAATTCATTATGCACAATGATCTTTGTCTATCAGCTAATGAAAAGCTTGGAAGTGGGAAAAAAGCTGATAAGCAATGATCCAAATTATTTT GGGGTGTAACAATGACCTATAATTGCATTATATTGCTGCTAGCCTGTGAAATAGTACTTGAAGAACTTCTGTAACTCAAGTATACCCCTGGCTATTGGGC CTATAGCATGGATGTATACATAAGTGTAACAAGACTTATTTTTTCTAAAACGTTATCTATTTGATTTTGATATTAAGTTATAATTTTTTTCTTCCTTTTG TGCCAAAAACATAAGCACCAAGTCATTAAAGCTAGCAGCTTCTCATTGGAAAAAAAAACATTGCAATATACAAAGAAAAGTAATAAAATAACTTGATCTT TCAAAGCTGTGAATGACACTTGGCATTTTCTTTAACAGAAATCCAAGAATATTGAAGCCTTTGGCATTGGCCATATCTAGTTTCCTGGTATGTTGGGTAC TGCCAAATATAGTTATTGAAGGTTCTCAACTCATTGTTCAGAAAGGTGGATCATCTTCTTCAGTAAGATTAGCATCACCTAATCCCGGAGGAACATCAAA TCCTGATATGAAATCGTCACCAAATATTACAGCACCAGCTGCTAATACCCCAGCGCCTAGCCCTACAGCGAACCCTGGAGGTCCCCTCCGTCCGGTGCCT TCCCTCGATGGCGCCATCTCTGTGATGCCTGCTGATAAGTCATCATTTCTTGGGAGAAAAATAGGAATGTAACCAATATTTGAGGGTGGAGGAGTTGTTC TAGTTCTAGGTGGCTGATAGCTTGGTCCAACTGCTGCATGGTAACTTGGTTCACCCACATATGGGTCAGAATGGTCAGGGATGTTTGTTTGTAGATGATT TTCTGGTTGATTTATTGATGCTTGAAGCTGCTGCTGTGAGTAGCCTTGCTCTAATGCACCCTTTGTGGTCAATTGGGTATCCTCGCACTGGAGGCAATCC TATCAGAGCCGGGAACATCCACAAGTATGTGGGGCTAACTCTCTCAGCGGTCATTTTTTCCATCCACAAGACTCAAACCAGGGACATTGTTTAAGGGGAA TAAACATATACCACTTGAACCAACACCGGTCAGTAAAGACAAGAGGTAACTTTAATAAAAAAAACTTGTCAGCTTCCACTTAAATTATGTTACCAATTAT CAGGAATTAGAGATGATATTTTGCACATAAAAAAAGCAAACACATTTAAACACAGACTTTCTATCTTTATTTTTCCAAACAAGTGAATTGTAAAAATGAC CTGAACTTAATGTATAAATATTATGACTCTAGATAACATTTCATACACAGATAGAATAGATGGATGAAGATATTATGTTTTTGTTCTCTTTCATCACAAT TTTTAGTGAAACCAAAATGTTCTACTTTTTTTTATCTCATGTCCTATTGTTTTGTTTCATCCTATTATGAGATGTTATACAAATGCTACCTATGAGTAAA GGAGAGAAACAAAAGATGCTAAATGCAGAAGAACAGGTACAGCAAAGCTGAAAGGCAAGTTTGCTCTTGTTTTTAAGTTGCGAAGTAATCAAATACCTGT TTGGGAATTTTGCTCTTTCTTTTCCTCAAAAACACGAATAGAAATATCAATGAAACCAATTAGTTTTCCAGATTTCTTTTTTCGTAGTTGGCAGCTCTGA ACTTCCTTATGCCTTGCCTTTGAGACCTCAGAATTCTTAACTTGCTTGACAAGAAACTCTTTGAGAACAACAGTTGCTGAGCCCTGAAGCTTTTCTGTTA GGAATATCGGTTCTAAACTGTAAACTTCCACATTCAGTGTCAAATTTTGGAAGTTTGGCGCCGAGTCATCGACGGGAATGGCAAATTTGGTTCCCCAAGC AGGATTTGGATTCCCAGAATCATCAACTTTGGTGCAGTATTTGCTGTTATGATCAATCCACCCTACAGCAAACCATTGACGTTTCCAAAGCGACGCTGGA GGCTCGATTCCATGAGCAGATATCAAACACACTTCCACCCAGATAATCCCCATAGGAATTAGACAGATAAACAGAAATGAGATGTTTTCTCCTTAAGCTT CTGAATGTTGCACCAGGAATAGAGACAAGGCAAACTTGTTCTGTGGTATTTGAAAGGCTACTTTACTTTATTAGTGAGAAAACTCTTATACCTTTTCCAG CTAAGTGCATATGGAGGTAGAAAGGAATCTCTTAAATATGCTTACATTGTGGGATTAATTGAAACCTCCTCATGCAAGGGTGGAAGCTTCATAAAGTAAA AAAAAATGATATTTTCACTCTAACCCATATTACGAAGTACATCTAAAAGGGTAGGGTGAGAATAAAAAGGGTGTGTAAGTGTGTCGGTTATTCCAAGTAT GAAGAAGAAGTCTTTGAATGAGTTAAATAGTATATAAGTGAATGAACTTATAGCCTTAATGCTTAAGATTTTTGGTTAATATATGGTGTCAAGTTTACTT ATATGTTTCTTTCACTTA BLAST |
Tissue | pods |
Gene name | LI_gene_169364; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_354008
Blastp | Abhydrolase domain-containing protein cgi-58 from Caenorhabditis with 31.45% of identity |
---|---|
Blastx | 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase from Klebsiella with 42.31% of identity |
Eggnog | alpha/beta hydrolase fold(ENOG4112C3B) |
Kegg | Link to kegg annotations (CELE_C37H5.2) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019417082.1) |
Pfam | alpha/beta hydrolase fold (PF00561.19) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |