Ll_transcript_353314

• Id Trinity: TRINITY_DN49451_c5_g2_i1
• Name Transcript: Ll_transcript_353314
• Sequence: AAGTATTTTTCTCTCAGTAGCCCAAATCATTATCAAAGCAGTGTAAGAAGGAAGAGAACAAATACTCCTTCTTACTCCTCCAAACATGGCGAAGAACAAG TCTCTATCCTCTTCTACTTCTTCTTCTTCTTCTTGTTACAGTACAAAAATGGTGTTTCAATGAATTGAAGAAAATGAAGTTGTTATTCTAAGAAACAATG ATTAAACTACAAAGAAGCTTCACCACTTGTTCCACTTCTACTTTCTCAACTTCTTCTTCTCTCTCTCTTCGCCACTTCTTCATGTTGCAATTTAGAATGC TTCAGAGTTCTCCAAACTCTTGCTTACAATACACGGCATTAGGCGTTGGGATTGGAAATAGTATCCAATGTCAAAGGTGTTTCCCCAACGTTAAGATTGG AGTGAAACCAAAAAACTATTCTAGCATTCAGCCGAGTTTTCGTTCCTTCAGCGGAACACGTGTTAGTGGTCGTGGTTCTAGGTGTATAGCAGCATCTCTT GGTGATTTTGGTTTTAGGTATCTGGGGAATGGTGTTGGAAGGAGTTTGATCAGTGATGGAGGTTTTCCGAAGAGATTTTCGTCTATTGTCAAGAAAGGAA CGGATAATAAAAAGAAGGGGGTCAAAGCTCTTGCCGTTCATGGCAAAGATAAAGATGCAAGTGATGGTGCCTCTGACTCTAAAGATGTTGTTGTTAATGG GGTGACTTCGAGGAAAAGTTCGGATGAAAACAAGAAAAAACCGAAGAAGGTGTCACCGGTATCAACTGCTCCTTCGGATGCTGCAAGTGATAAGAAGGAC ACTAAAGTTGCTGCCAAAAAGAAGAAGCCATCAAAAAGCAAGAAAAACAGCACGGTTGCTGGAGCGGAAGTTTCTACGAAATCTTCCAAAGGGAAGAAGA CATCTAATTCTAGTGAACCTAAAGCTGATAGTGCAGTTGAAGAAGTTCCAGATAATAATGCTCCTACTAAGAATCAGACAAAGAAAAAAAGTGGGAACAC TGCTCAGGCAGAACAGGTGAAATCATCCCTTGGGAAATTTACCGACAAGCCACTATATCCTCCTACTGGAAAGTCTGTGCTGGTCGTGGAGTCTGTTACA AAGGCGAAGGTCATTCAGGGATACCTTGGCGATATGTATGAAGTCTTGCCGAGCTATGGTCATGTTAGAGATTTGGCTGCAAGGTCTGGATCTGTGCGAC CTGATGATGATTTTAGTATGGTGTGGGAGGTTCCGTCGCCTGCCTGGACTCATCTGAAGAGCATCAAGGTTGCACTCAGCGGAGCAGAAAACCTTATTCT TGCGTCAGATCCCGATCGTGAGGGAGAGGCTATTGCCTGGCACATTGTCGAGATGTTACAACAACAAGGTGCTCTGCATGATAATATTTCTGTAGCAAGG GTTGTCTTTCATGAAATAACGGAAAAGGCGATAAAAGGTGCTCTGCAAGCACCACGAGAGATTGATGTCAGTTTGGTCCATGCTTACCTTGCACGGCGTG CTCTTGATTATCTGATTGGGTTTAATATTTCACCATTACTATGGAGGAAATTACCAGGTTGCCAATCAGCTGGAAGAGTTCAATCCGCTGCACTTTCACT TATATGTGATAGAGAAATGGAAATTGACGAGTTCAAACCAAAGGAGTATTGGACTGCGGAGGCCCATTTGAAAAGAAAAGAGCCGGGGTCAAATGAGGAC CTTAATTTTCCTGCTCACTTGACCCATTTGGATTCAAAAACGTTGAATCAATTTTCAATTACTTCTAATACAGAGGCAACAGATGTCGAAAACAAAATAA ACTCAGCAGAACTTCAGGTTATTAGGTTGAAAAGAAACAAAATTCGAAGAAATCCTCCTACACCTTATATAACATCAACACTTCAACAAGATGCTGCAAA CAAATTACATTTCGCAGCAAGTCACACAATGAAGCTGGCTCAGAAACTATATGAGGGAGTCGAACTTTCTGATGGTAAAGCAGTGGGTCTGATAACATAC ACCAGAACAGATGGATTACATATTTCTGATGAAGCTGTTACTAATATACGCTCCTTGATCACTGAAAGGTATGGACAAGAGTTTGCCGCACAAAGTGCAC CAAAATATATTAAAAAGGTGAAAAATGCACAAGAGGCCCATGAAGCCATTAGACCGACCGACATACAGAAGTTACCATCAATGCTTGTTGGGGTACTAGA TGAAGAATCCTTGAAGCTGTACACGCTTATTTGGTCACGAACAGTTTCATGTCAGATGGAACCAGCTATCTTTGAGCAGATACAAGTTGATATTGGAAAT GCTGGTGAGTCTATTATTTTACGATCTACAAGCTCAAGGGTTGATTTTGCTGGATACCGGGCAGTTTTTACGGACACTGAAACCGAAGCCGTTCAAGATA AAGGAAATGATGGATCTAATCGTGATCAATATTTTGGAGTTCTAAGTTCCTTGAAGCAAGGGGATCCATTACTACTTGTTCGAGCAGAGCTTAATCAGCA CCATACGCAACCACCGCCACGTTACAGTGAAGCATCATTGGTTAAGAAGCTTGAGGAGCTTGGGATTGGAAGACCTTCGACATATGCATCCACATTGAAA GTTTTGAAGGATAGAAATTATGTGATAGTAAAAAGTCGTGTTCTGACTCCAGAATTTCGTGGTCGCATGGTGTCGGCTTTTCTTTCTCATCATTTTTCAG AGGTCACAGACTACAGTTTCACTGCTGATATGGAAACCGAGCTTGATAATGTTTCTGCCGGATTAACCGAATGGAAAGGCCTCCTTAGAGATTATTGGAC ACGGTTTAAATCATATTGTGACCGTACTTCTAATGTTCATATTCACCAGGTTGAGAAGATGTTGGAAAAAAAATTCGGGGATTATTTATTTGCTTCTCTC CCAGATCAGAGCCGGGTGTGTCCAAGTTGTATGGAAGGCACCCTGATTTTCAAAGTGAGTAGATTTGGTTCTGGATACTTTATAGGCTGTGATCAACATC CGAGATGCAAGTATATTGCTAAAACGTTATATGGTGTAGACGAGGATGAAGATACACCTCAGCCAAACACTACAATAGAGGAACCGAAAATCTTAGGTGT TAGCAGTGGTTCAAATGAAAAGGTTCTTTTGAAAAAGGGTCCTTACGGATTTTATATTCAACTCGGAGAAGACAGGAAAGGATACATACCTAAAAGATCC TCTGTCTCTCATATCAAGGATGTGGACTCTATCACCCTTGAAGATGCACTTGATTTGCTAAAATACCCATTGACATTGGGTAACCATCCCGATGATGGAC AACCTGTCATATTAAAGCTTGCGAGAGTTGGATTTTCTGTTCGATATCGCCGCACAATTGCTTCGGTTCCTAAGGACATGAAGCCAAGTGAAGTGACCAT TGAAAAAGCTCTTGAACTTTTGTCAGGTAAAGATGTGAGGCAATCTGGTAGACCAAAAGGAAAATCAAAATCTAAAGAAGTTGAAGCTATTGAATCCTTT TGAAATGTTCATCAATTATTTTTTTCCATATAGATTCTTCAACTGATTTTGGAGTAGTGAATTTTGTTGTAACCTTTTTGGTTAGCTGTGTATAACTACT GTAGACCAATCTGATATTTTTTATTCATAGGAATAATTGAATATTATTTATAAGTGAATCCAAGAGATACCAGAAATTATTGTCCAATGTATTTGGTATT TTGATTATTTGGTTGTAGAAAACCTTCATCTTATTGTGATTTCACATTATTATCTAAGATATGGAATAGAGTAAGTGGATCCCTTCC
• Tissue: pods
• Gene name: LI_gene_169478;
• Additional information: details;

Expression of Ll_transcript_353314

FPKM

• PAB: 2.2
• PNAB: 9.7
• PS1: 6.5
• PS2: 4.8
• PS3: 6.3
• PW1: 7.4
• PW2: 4.8
• PW3: 3.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_353314

• Blastp: DNA topoisomerase 1 from spotted fever group with 42.58% of identity
• Blastx: DNA topoisomerase 1 from spotted fever group with 42.58% of identity
• Eggnog: Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity)(COG0550)
• Kegg: Link to kegg annotations (RF_0530)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019438806.1)
• Pfam: Toprim domain (PF01751.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;