Ll_transcript_405961

• Id Trinity: TRINITY_DN49522_c5_g1_i2
• Name Transcript: Ll_transcript_405961
• Sequence: TGCAAATTCTTCAGATTGGAAGTAATGGAACAACTTTTAAATCTTCACATTTCATCATAAGAACATCCTCGATCTTTTGTATCATCATCTCCGAAAGACA AAATGGGTTTGAAGAAATTCCTAAAACCAATATCAAAACCACAACTTGACTACCACCCTTTACCACCACTCTCTCCAATCCCAAACCCACCGCTTCCATC TCCGCCACCACACACTTCACCTCCTCCTCCATCTCCTCCCACTCTCTCCCTCTCTCCCCTCCCTCACCACCACTTCCACCACCTCCAACTCTTCCTCAAA ACCCATCTCTCCCCTCCCTTCACCCCTCTCTCCCTCCTCCACTTCCTCAAATCCAAGCTCCACCACCACCCTTCCTTTTCCCACTATGACTTTCATATCT TCAATTGGGCATCAAAAATTGATTCTTTCCGCCATACCCATCTCACTTTTCATTGGATGGCACAGACCTTATCCGTAACGCACCGTTTTGATCAACTTAG AACCCTTATTGAGTTCATTGCATCGAATCCTTGTCCGTGTTCTGATGGTACTATATTCTCTTGCCCTCAAATTGAACCTATTTTCAGGTTTGTAATTCAT GGGTATTGTAAAGTTGGGAACTTTGATGATGCCCTTTACGCGTTTCGGACAATGGTTAGGTTGATTGATGGGAGGCCTAGTGTTGTGGTTTGTAATATTT TGCTTCATGGGTTTGTGAAATGTGGGAGGTTTGATAGGGCTTTGGGGTTTTATCATGATGAGATGGTTAGATATAGGGTTAAGCCTGATGTGGTTAGTTT TAATATTTTGATTAGTGGCTATTGTCGTGATTCGCGGTTTGAGTCTGCTTTGGAGATGTTTAAGGAGATGAGGGAAATGGGGTGTGATCCAAATGTGGTT ACTTTTAATACATTGGTTAAGGGGTTGTTTAGAGAGGGGAAGGTTGAGGAAGGGATTGGGATGGTAAATGAGATGATTGAGTTGGGGTACCGGATTTCGG ATGTGACTTGTGAGATTTTGGTGCATGGACTTTGTAAGGAAGGAAGGGTTTTGCAAGCGTGTGAGATGTTGGTGGAGTTGTCGAAAAGGGGAGTTTTGCC AAAAGGGTATGATTATTTTGGTTTGGTGGAAGTTCTGTGTGGGGAAGGACGTGTTGTTAGAGCGTTGGAGCTTATTTATGAGTTATGGGACCGAGGAAGT GTTCCGAGCTTGATTGCTTGTACTGTGATGGTTGATGGTTTAAGTAGATCGGGGAAGAGTGAAGAAGCTTTGAGTTTGGTGGAAAAGATGCTTAAAGAGG GTATGGTATTGGATATTGTGACTTTCAATTGTGTCCTTCAAGATATTTGCAATGTGGGAAGAACAAAAGAAGCGAATAAATTGAGATTACTTGCTTCAAG CAAGGGTTTGGAACTTGATGGCATGACATATAAAATTTTGGTGACTGGGTATACAGAAGAGGGCAATCGAAAGGAGGGAGAGTTAGTGGTAGACGAAATG TTGGATAGAGGATTCATACCTAGTCTTGCTTCATATAATAAATTGATGAATGGATTATCTAATTGCCGACGCTCTACTCTTAAAGTGAACAAATTTGGTT GCTGAAAATACAAGCATTATATTTTACATGGTCATAAATTGACAAGACATGGAGTTCTTGGGTTCAAATTATGGAAACAGCTCCTTAGCTTGCAAGGGTA AGACTGTTTATATCTACCATCCTCATGTCCCATTAGGTGGGAGCCTCGTATACCGGTCGACAACATTGGTTAACGGTTAACGTGATTATGGAATGATTGG GACCAGAGTTATCATATTTCTGTGAAAAAATCAGCTGGAGTATGATTATTTGTTTTGCACAAAGATGAAGGTAATGTGAAGATCTCTTTGAAGTTGGTTA GTGATCTAAACTTCCAACTACCATCCTAAAATTTATTCTTTTGTGTAGTCAATGCAATGACCTGTCAAATTTTGAAGGCGTTATTTCATGAAACTTTGGT TAGCTTTCATTAGTTTTCATTCCCCGTGGCACATTTTCACTTGTTTTTGTATCATATCAAAGAGCGCTATATTTTTAGTTTAGATGAATAATGAGATGCA TTGGAGGTTAAAAAATGCACTAGCTCATGTACACAGATTTTGCAATGCAAACATACTAGGTGAAAGAAAAGAGAAAATATTAGATTTCTTCAAAACTACA GCACCATAAAAATTACACAGCTAGAAGTATGACTAGATAATAGATATACATGACAGATTGTGGTATTGCTTTTATCATCTTTATTGCAAGAAACATGGAA GCATTTGAAAGAACCGAAATAATTTCGTATCCTATTGTTATTCGGACATCTCGTTACCTAATTGCATAGTTTTTATAGGAGTAGGTTTCATGAAACAAGA TTGAGTTAAACAAGCATGTGTTGGACATTATAAAACTTTGGAAATAAACATTTGGATCTCTGTATTAAACATTTGTATAGGTCAAATTGCATTATGGCAC TTCACTGTTTGATTTGTAATGATCTTGAAATTTCAGGGGCTTGAGTTCATTTATCGGCGTCATTGTATTACGGCCCGCAGCGTAGCCTCGACGCTGCATT AGATTCGAGGTGATGCAAAACTGAAAATGGAGTTAGGATTCTCTCTAATATAGCAAAGATGCTATATTGTGTCATCATCTGATCCTTGTTATCAAGACTA CAATCAAGAATAACCCTATAACACAGCATAGAGAGAGCATGATCAGTTTCTTTAACACTCCCTGTTGTAACAAACTTCCCAGAAACCTTGTCTTCTATGA CACAAATAACATGATCATCTCCAAGGGAACTTAGTTCTCAAAATCGAGATTCAAATTCCTCGTTGGAAACAGGGGTGAAGATCAACTTACTCCAAGAGTA AGTCTTTTTAGGAGTAAAGACTTACTCCTCATCCCAACCATCAATTCCTTGAAAATCCAATGGTTTGAATCTTCCACTAAGTCAAATCATTGGATTTTTC TAAAATTGATGGCTAAGATGAGAAGTAAGTCTTTTAAACTTACTCTTGGAGTAAGTTGATTCCTCCTCGAATCATAAACACTGAATTGTTGCAGTAACTA TAAAACCGTTATCTTTGTCTGACATCTCTAGTTTTAGCAATGTAAACCTTTGCTCGTCACTTTGAGTTTGAGTTTGTTGCATATTCTCCAATGCAAAAGT GATTAACGGGAGACATAATCCATTGTAATCAACAATCAAAGATATTAATATATAAGTTTATAG
• Tissue: pods
• Gene name: LI_gene_170051;
• Additional information: details;

Expression of Ll_transcript_405961

FPKM

• PAB: 0.4
• PNAB: 0.5
• PS1: 0.3
• PS2: 0.2
• PS3: 0.3
• PW1: 0.1
• PW2: 0.1
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_405961

• Blastp: Pentatricopeptide repeat-containing protein At2g36240 from Arabidopsis with 52.98% of identity
• Blastx: Pentatricopeptide repeat-containing protein At2g36240 from Arabidopsis with 55.16% of identity
• Eggnog: Pentatricopeptide repeat-containing protein(ENOG410Z7Z7)
• Kegg: Link to kegg annotations (AT2G36240)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019424640.1)
• Pfam: PPR repeat (PF01535.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;