| Id Trinity | TRINITY_DN49581_c4_g2_i4 |
|---|---|
| Name Transcript | Ll_transcript_405019 |
| Sequence | GAATACCGGTTCTGACCTTAGGCGTAGTACTTTTTTTTCGTATAACAAGGGTATCCCACAGCTTAAGGAAATAATCCCTTCGTGTTGGGTGACTCCTCGT AACAATTGTCGCTCACAGGTCAGAGCTTTGACCTTATACCACTAGAGTAACGCCTTGTTGATCTTTTTTGTAGTACTAAGTTCAAAATGTTGGTCAAATT AGTCTTTTTGTGGTACTAAGTTCAAAATGTTGGTGAAACTAGTCTTCTTTTAGTACTAACTTGATTATTGTTTTCAAAGTAAATAGTTTACATGTCTTAA ATTTATTGAAATTACACATTGTATCCATTTTTTTATGCCTACAGAAATCATCAATGTCCATATAATAATATACTTGCATTTCACTTGGTACAATGGTGAG TGTAATTGCAACGACCACCCTAAGGGTGGTGAGTGTAACATTTTAAACATGCAGCTGGTAAGTGTAATTTTAAACATGAGGATCGTGCACTTGAGTGAGT ACTTGTAATCTTCTGGTAGACGAGTTTGCCCTACTCTGGGTCTGGCCTGGGCCAACTGTGTTAACTCAGGTGTAATTAAGTTAAACCTGAGGGGGTGTCA ATATAATTTACGCCTTGTTTCTATCATTTAGAGCTAACTTGATCTATGTTTTGAATCTAACTTTAGAGATTTAGGGATTATGAACAAATGTGTTATTTGG TCGTTTATTTATAAGATGAGAAATGATAGTAACACACTATTTAGCAAACATTCTGTTGTTGATTCATGTTACATCTCCAAAATCATCCCCACTATACTAT GTATTTGGTCTATCCGTCCAAATCCACCAGATAATAAAGTAAGAATGTGTGTGGACTATGTTGCTAGCATTTCTCTTATAATGCTAGCAGCACACTCTTT TAAACACTCTTCTTAAAAGCTCATTTTGGTAGTAGTCCTGCATGAACTCCATTTGATGGTAAAATAATAAACCATGCCTTGAGGAGAATGTAAAAATGTA GTACTACCAATTTTTCATTCACATTTGACCTTCTAGTGATTTTTTGGATCCATCTCTATGTAGGTCATCGCTGTTTTTCAAGATTTCGGGGGCATTGAAG TCATTGGCAAAGAGGTATGGATTGGCGGTCATGGTAACAAACCAGGTGGTTGATATGATTGGCGGGGCATGTCCGGGTATAACAGGGATGAGGATTGGGA ACTTGACTGAGTTGTATTCTTCGGGTAGACAAATTTGCCCTGCTCTAGGTCTGGCTTGGGCCAACTGTGTTAACTCGAGGCTGTTCTTATCAAGGGATCA AGCCGTTAACGGGAATGGTGAACTTTATCAGCGAAGGAGACTCTGTGTCGTGTTTGCTCCTCATTTGCCTGCATCTTCTTGTGATATTGTGATAAAAGGA GAAGGAGTTTTTGGTGTAGAGATGCAGCAGGCATAACCATTAAGTATAATATGGGAATTTCTACCAGGTACAAAGAAATGAGAAATGTGTGAATTCTTAT GGGTTTTTTCTGATTTATTTTAATAGGTAGAAGTAGTGTCTTAAATTGTGGTTGCGGTTACTGTGATTGCGGTAACGGTTGCGATTACTGCGATTGTGGT CGTTGCGATGCGGATTGTGGCCGTTATGGTGTGAATTACTTTGTGAGTAAAAATATATTTTTGACATCGATGTGGTCTGATGCGGCCCAATGCGGTTGCG TTGCGACCTGATACAGTCCAAATGCGGTCCGATGTGGTTGCGTTGCGGTCTGTTGTAGTCACAAGTGCGGTGTGATGCGGATGCGGCGGTCACCATAACC GCAATAATGCGGCCGCATCACGTGATGCGGTCCACATTTTAAAACACGGAATGTGGTCTTGGTTGCAATGACTTGATTGAGGCCATTGCAATACGGATTA TAGCCGTTGCGGTGTGAATTATTTTATGATTAAAATAATACTATAGAATTCGATATGGCGTGTGTGGCCCAATTGTGTTCTGATTCGGTTGCACTACAGT CACATCATTGTGATTTGTTGTCACACCGCAATTGCGATGTGATGCGATTTCAGTAGTCACAATTTGAATTTGTTGATTAATATGACTCATAATCTTTTAC TTTTATATTCATTAGTCAATAAAAAGCCAATATGGCTGTTAGGAATATTTTACCTAGGATGCTAAAATACTTATCTGACTTATTATATGTATCTTTTGAA TTTGTTGATTAATATGACTCATAATTTTTTATGCATCGGTTTTCTTTTACATGCTATATAAATATGTATCTTGT BLAST |
| Tissue | pods |
| Gene name | LI_gene_170566; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_405019
| Blastp | DNA repair protein XRCC3 homolog from Arabidopsis with 45.87% of identity |
|---|---|
| Blastx | DNA repair protein XRCC3 homolog from Arabidopsis with 50% of identity |
| Eggnog | Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (By similarity)(COG0468) |
| Kegg | Link to kegg annotations (AT5G57450) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019415847.1) |
| Pfam | Rad51 (PF08423.10) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |